miRNA display CGI


Results 121 - 140 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 144 0.67 0.238139
Target:  5'- gCGCGGCCaucuUGCUUCCaaacucauuagcauaCCCCGCCCa- -3'
miRNA:   3'- -GCGCCGGgc--GCGGAGG---------------GGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 68614 0.67 0.236576
Target:  5'- gCGCGGUcgcugcgcccccagCCGCGCagcuccagCCcaaacuucaccgccuCCCCGCCCCUg -3'
miRNA:   3'- -GCGCCG--------------GGCGCGga------GG---------------GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 68449 0.67 0.236057
Target:  5'- cCGCagaGGUCCGCGCCcgcggCCggggCCCCGCCgCg -3'
miRNA:   3'- -GCG---CCGGGCGCGGa----GG----GGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 132712 0.67 0.236057
Target:  5'- gGCGGCCC-UGCCggCCgCCGCgggggCCCCu -3'
miRNA:   3'- gCGCCGGGcGCGGagGGgGGCG-----GGGG- -5'
6514 3' -71 NC_001847.1 + 48642 0.67 0.236057
Target:  5'- gGCGGCgggGCGCCgccgCCCCCgcaGCCUCg -3'
miRNA:   3'- gCGCCGgg-CGCGGa---GGGGGg--CGGGGg -5'
6514 3' -71 NC_001847.1 + 39962 0.67 0.236057
Target:  5'- uCGCGcCCCcgaucGCGCCcccgaucgcgCCCCCCGCCaugCCg -3'
miRNA:   3'- -GCGCcGGG-----CGCGGa---------GGGGGGCGGg--GG- -5'
6514 3' -71 NC_001847.1 + 104108 0.67 0.236057
Target:  5'- gGUGGCUgGcCGCCUCgCCCUccacgaaguccgGCuCCCCg -3'
miRNA:   3'- gCGCCGGgC-GCGGAGgGGGG------------CG-GGGG- -5'
6514 3' -71 NC_001847.1 + 62021 0.67 0.230917
Target:  5'- cCGCGaGCaCgGCGgCUaCCUCCGCCaCCCg -3'
miRNA:   3'- -GCGC-CG-GgCGCgGAgGGGGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 16308 0.67 0.230917
Target:  5'- uCGC-GCUCGCGCCcucggCUCCgCGCCCUa -3'
miRNA:   3'- -GCGcCGGGCGCGGa----GGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 71851 0.67 0.241292
Target:  5'- uGCuGGCCCgGUGCUUCCgCCgCCGCUCa- -3'
miRNA:   3'- gCG-CCGGG-CGCGGAGG-GG-GGCGGGgg -5'
6514 3' -71 NC_001847.1 + 126451 0.67 0.241292
Target:  5'- aGUGcGCCC-C-CCUCCUCuaGCCCCCc -3'
miRNA:   3'- gCGC-CGGGcGcGGAGGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 127008 0.67 0.246624
Target:  5'- cCGCgaGGCUCGuCGgC-CCgCCCGCCCCg -3'
miRNA:   3'- -GCG--CCGGGC-GCgGaGGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 121475 0.67 0.246624
Target:  5'- gCGCGGCUCGUGgUUCCacaCCGCgCCg -3'
miRNA:   3'- -GCGCCGGGCGCgGAGGgg-GGCGgGGg -5'
6514 3' -71 NC_001847.1 + 106903 0.67 0.246624
Target:  5'- -uCGGCCUcaGCGUcggcgucggugCUCCCCUcccgggccuCGCCCCCa -3'
miRNA:   3'- gcGCCGGG--CGCG-----------GAGGGGG---------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 59737 0.67 0.246624
Target:  5'- uGUGGCCCGCGa---UgCCCGCCUCg -3'
miRNA:   3'- gCGCCGGGCGCggagGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 12747 0.67 0.246624
Target:  5'- uGCGGCCCaGCGCCUUCUUCgCGCa--- -3'
miRNA:   3'- gCGCCGGG-CGCGGAGGGGG-GCGgggg -5'
6514 3' -71 NC_001847.1 + 134139 0.67 0.246624
Target:  5'- gGCGGCCugguggagcgCGUGCCgccgCCggcggcggaagCCCCGCCggCCCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGa---GG-----------GGGGCGG--GGG- -5'
6514 3' -71 NC_001847.1 + 107445 0.67 0.246624
Target:  5'- gGCGGCCCgccggcgcucgcGCGCCUCagCCCgaCGCgCCg -3'
miRNA:   3'- gCGCCGGG------------CGCGGAGg-GGG--GCGgGGg -5'
6514 3' -71 NC_001847.1 + 24691 0.67 0.246624
Target:  5'- -aCGGUCuCGaCGCCUagCCCCUCGCgCUCCa -3'
miRNA:   3'- gcGCCGG-GC-GCGGA--GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 132842 0.67 0.241292
Target:  5'- uGgGGCCCaUGCCgCCCggcggcCCCGCCgCCg -3'
miRNA:   3'- gCgCCGGGcGCGGaGGG------GGGCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.