miRNA display CGI


Results 141 - 160 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 81819 0.67 0.257579
Target:  5'- gGCGGCggggCGCGCCgUCUgUCGCCCgCCg -3'
miRNA:   3'- gCGCCGg---GCGCGGaGGGgGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 93802 0.67 0.257579
Target:  5'- gCGCGGCCgCGCgGCCgagUCCCCGCUg-- -3'
miRNA:   3'- -GCGCCGG-GCG-CGGag-GGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 132877 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 39589 0.67 0.262072
Target:  5'- gGUGGCCCcaGCGCUgcugcggcgcggCCCCa-GCCCCa -3'
miRNA:   3'- gCGCCGGG--CGCGGa-----------GGGGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 37286 0.67 0.263205
Target:  5'- aCGCGGgCC--GCCUUUCCCCGUCCg- -3'
miRNA:   3'- -GCGCCgGGcgCGGAGGGGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 1158 0.67 0.263205
Target:  5'- cCGauGCCgCGCGCgCUCCCa--GCCCCg -3'
miRNA:   3'- -GCgcCGG-GCGCG-GAGGGgggCGGGGg -5'
6514 3' -71 NC_001847.1 + 65060 0.67 0.263205
Target:  5'- uGUGGCCCGUGuCCUacaUCCCCGCa--- -3'
miRNA:   3'- gCGCCGGGCGC-GGAg--GGGGGCGgggg -5'
6514 3' -71 NC_001847.1 + 12089 0.67 0.252053
Target:  5'- cCGCGgguccggcGCCCGCgGCCguaCUUCCagcgGCCCCCg -3'
miRNA:   3'- -GCGC--------CGGGCG-CGGa--GGGGGg---CGGGGG- -5'
6514 3' -71 NC_001847.1 + 96873 0.67 0.252053
Target:  5'- gGCGGUCCGCGCUggggagggaCCgCCGUgCUCg -3'
miRNA:   3'- gCGCCGGGCGCGGag-------GGgGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 18737 0.67 0.252053
Target:  5'- gCGCGGCCCGgGg--CCCagagcgCCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGCgCggaGGGg-----GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 126129 0.67 0.246624
Target:  5'- uGgGGuCCCGagugaGCUccgCCCaCCCaGCCCCCa -3'
miRNA:   3'- gCgCC-GGGCg----CGGa--GGG-GGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 134139 0.67 0.246624
Target:  5'- gGCGGCCugguggagcgCGUGCCgccgCCggcggcggaagCCCCGCCggCCCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGa---GG-----------GGGGCGG--GGG- -5'
6514 3' -71 NC_001847.1 + 12747 0.67 0.246624
Target:  5'- uGCGGCCCaGCGCCUUCUUCgCGCa--- -3'
miRNA:   3'- gCGCCGGG-CGCGGAGGGGG-GCGgggg -5'
6514 3' -71 NC_001847.1 + 59737 0.67 0.246624
Target:  5'- uGUGGCCCGCGa---UgCCCGCCUCg -3'
miRNA:   3'- gCGCCGGGCGCggagGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 106903 0.67 0.246624
Target:  5'- -uCGGCCUcaGCGUcggcgucggugCUCCCCUcccgggccuCGCCCCCa -3'
miRNA:   3'- gcGCCGGG--CGCG-----------GAGGGGG---------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 121475 0.67 0.246624
Target:  5'- gCGCGGCUCGUGgUUCCacaCCGCgCCg -3'
miRNA:   3'- -GCGCCGGGCGCgGAGGgg-GGCGgGGg -5'
6514 3' -71 NC_001847.1 + 127008 0.67 0.246624
Target:  5'- cCGCgaGGCUCGuCGgC-CCgCCCGCCCCg -3'
miRNA:   3'- -GCG--CCGGGC-GCgGaGGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 132929 0.67 0.246624
Target:  5'- cCGCGGCgCUgGCgGCCUaCUgCCGCCCCg -3'
miRNA:   3'- -GCGCCG-GG-CG-CGGAgGGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 88871 0.67 0.249869
Target:  5'- aCGCGGUgCGCGCggcggcggcggcggCUCCCgCCgggggcgGCUCCCu -3'
miRNA:   3'- -GCGCCGgGCGCG--------------GAGGGgGG-------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 92224 0.67 0.263205
Target:  5'- gGCGGCCagcagCGCGCgCUCUCgagCCGCCUgCa -3'
miRNA:   3'- gCGCCGG-----GCGCG-GAGGGg--GGCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.