miRNA display CGI


Results 61 - 80 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 113422 0.76 0.053366
Target:  5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3'
miRNA:   3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 3997 0.76 0.056185
Target:  5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3'
miRNA:   3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 66572 0.76 0.057578
Target:  5'- gCGCGGaaCUCGCGCgcgcggUUCCCCUCGCCCCUu -3'
miRNA:   3'- -GCGCC--GGGCGCG------GAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 92138 0.76 0.059004
Target:  5'- gGCGGCCCggcGCGCC-CCCCCggcggCGUUCCCg -3'
miRNA:   3'- gCGCCGGG---CGCGGaGGGGG-----GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 10609 0.76 0.053366
Target:  5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3'
miRNA:   3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 10706 0.76 0.053497
Target:  5'- gCGCGGCCCGCGCCggCCaagCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGCGCGGagGGgg-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 106810 0.76 0.056185
Target:  5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3'
miRNA:   3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 113570 0.76 0.056185
Target:  5'- cCGCGGCCCccucucccGC-CCUCUCCCCGgCCCUu -3'
miRNA:   3'- -GCGCCGGG--------CGcGGAGGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 38329 0.75 0.066663
Target:  5'- gCGCGGUcgCCGcCGCUgcgcgCCCCCCGaCCCCa -3'
miRNA:   3'- -GCGCCG--GGC-GCGGa----GGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 46787 0.75 0.069988
Target:  5'- cCGC-GCCCGCGCg-CCCCUCGUUCCCc -3'
miRNA:   3'- -GCGcCGGGCGCGgaGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 40280 0.75 0.069988
Target:  5'- aGCuGCCCGCGCC-CCCCaagGUCCCCc -3'
miRNA:   3'- gCGcCGGGCGCGGaGGGGgg-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 96710 0.75 0.068306
Target:  5'- uGCGauGCCCGCcCCUCgggCUCCCGCCCCUg -3'
miRNA:   3'- gCGC--CGGGCGcGGAG---GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 53868 0.75 0.067316
Target:  5'- gGCGGCgCCGacCGCCgcgggggcggcgggCCCCCCGUCCUCg -3'
miRNA:   3'- gCGCCG-GGC--GCGGa-------------GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102769 0.75 0.066501
Target:  5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3'
miRNA:   3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 109394 0.75 0.065058
Target:  5'- uGCGGUgCCGUGCCgccgCCgCCCGCCgCCg -3'
miRNA:   3'- gCGCCG-GGCGCGGa---GGgGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 126502 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 80593 0.75 0.063491
Target:  5'- gGCGcGaCUGCGUCUUccccgCCCCCGCCCCCg -3'
miRNA:   3'- gCGC-CgGGCGCGGAG-----GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 16027 0.75 0.063491
Target:  5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 15908 0.75 0.063491
Target:  5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 88598 0.75 0.060317
Target:  5'- gCGCGGCUggaggaccucgcgCGCGCCg-CCgCCGCCCCCc -3'
miRNA:   3'- -GCGCCGG-------------GCGCGGagGGgGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.