miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 16027 0.75 0.063491
Target:  5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 102928 0.75 0.060464
Target:  5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3'
miRNA:   3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 58750 0.75 0.065058
Target:  5'- cCGCGGCCCccgGCGCC-CCCCCCGaggCCg -3'
miRNA:   3'- -GCGCCGGG---CGCGGaGGGGGGCgggGG- -5'
6514 3' -71 NC_001847.1 + 115 0.75 0.060464
Target:  5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3'
miRNA:   3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 89615 0.75 0.063491
Target:  5'- gCGCGGCacggccccguCCGCGCCgCCCggcggcggcgCCCGCCCCg -3'
miRNA:   3'- -GCGCCG----------GGCGCGGaGGG----------GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 23689 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 46787 0.75 0.069988
Target:  5'- cCGC-GCCCGCGCg-CCCCUCGUUCCCc -3'
miRNA:   3'- -GCGcCGGGCGCGgaGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 96710 0.75 0.068306
Target:  5'- uGCGauGCCCGCcCCUCgggCUCCCGCCCCUg -3'
miRNA:   3'- gCGC--CGGGCGcGGAG---GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 53868 0.75 0.067316
Target:  5'- gGCGGCgCCGacCGCCgcgggggcggcgggCCCCCCGUCCUCg -3'
miRNA:   3'- gCGCCG-GGC--GCGGa-------------GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 80593 0.75 0.063491
Target:  5'- gGCGcGaCUGCGUCUUccccgCCCCCGCCCCCg -3'
miRNA:   3'- gCGC-CgGGCGCGGAG-----GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126502 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102769 0.75 0.066501
Target:  5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3'
miRNA:   3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 38329 0.75 0.066663
Target:  5'- gCGCGGUcgCCGcCGCUgcgcgCCCCCCGaCCCCa -3'
miRNA:   3'- -GCGCCG--GGC-GCGGa----GGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 55580 0.75 0.066663
Target:  5'- cCGCGaGCCCgGCGCCcCCcgcgagCCCCaGCCCCCc -3'
miRNA:   3'- -GCGC-CGGG-CGCGGaGG------GGGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 38718 0.74 0.080946
Target:  5'- cCGgGG-CCGCGCCUgCCgCCGgCCCCg -3'
miRNA:   3'- -GCgCCgGGCGCGGAgGGgGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 14210 0.74 0.082925
Target:  5'- aGCcaccacGCCCGCGCgC-CCgCCCCGCCCUCg -3'
miRNA:   3'- gCGc-----CGGGCGCG-GaGG-GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 109762 0.74 0.080946
Target:  5'- cCGCGGUCC-C-CCUCCgCCCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGcGcGGAGGgGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 133046 0.74 0.077122
Target:  5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 135074 0.74 0.083729
Target:  5'- aGCgGGCCCGgGCCcgccgcgccgaaauuUCCgCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGGCgCGG---------------AGG-GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 64881 0.74 0.082925
Target:  5'- gCGCGccgagagcaacGCCgCGCGCCcgCCgCCCGCCCCg -3'
miRNA:   3'- -GCGC-----------CGG-GCGCGGa-GGgGGGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.