miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 23689 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126502 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 58750 0.75 0.065058
Target:  5'- cCGCGGCCCccgGCGCC-CCCCCCGaggCCg -3'
miRNA:   3'- -GCGCCGGG---CGCGGaGGGGGGCgggGG- -5'
6514 3' -71 NC_001847.1 + 109394 0.75 0.065058
Target:  5'- uGCGGUgCCGUGCCgccgCCgCCCGCCgCCg -3'
miRNA:   3'- gCGCCG-GGCGCGGa---GGgGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 102769 0.75 0.066501
Target:  5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3'
miRNA:   3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 55580 0.75 0.066663
Target:  5'- cCGCGaGCCCgGCGCCcCCcgcgagCCCCaGCCCCCc -3'
miRNA:   3'- -GCGC-CGGG-CGCGGaGG------GGGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 38329 0.75 0.066663
Target:  5'- gCGCGGUcgCCGcCGCUgcgcgCCCCCCGaCCCCa -3'
miRNA:   3'- -GCGCCG--GGC-GCGGa----GGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 85093 0.75 0.066663
Target:  5'- gCGCGGaCCCGCgGCCgCCaCCgCGCCCCg -3'
miRNA:   3'- -GCGCC-GGGCG-CGGaGG-GGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 94761 0.75 0.066663
Target:  5'- -uUGGCCgGgGCCgucgCCCCCCGCUUCCg -3'
miRNA:   3'- gcGCCGGgCgCGGa---GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 53868 0.75 0.067316
Target:  5'- gGCGGCgCCGacCGCCgcgggggcggcgggCCCCCCGUCCUCg -3'
miRNA:   3'- gCGCCG-GGC--GCGGa-------------GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 117065 0.75 0.068306
Target:  5'- aGCcucGCCCuCGCCUCCgcccuCCCCGUCCCCa -3'
miRNA:   3'- gCGc--CGGGcGCGGAGG-----GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 96710 0.75 0.068306
Target:  5'- uGCGauGCCCGCcCCUCgggCUCCCGCCCCUg -3'
miRNA:   3'- gCGC--CGGGCGcGGAG---GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 46787 0.75 0.069988
Target:  5'- cCGC-GCCCGCGCg-CCCCUCGUUCCCc -3'
miRNA:   3'- -GCGcCGGGCGCGgaGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 40280 0.75 0.069988
Target:  5'- aGCuGCCCGCGCC-CCCCaagGUCCCCc -3'
miRNA:   3'- gCGcCGGGCGCGGaGGGGgg-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 127707 0.74 0.07171
Target:  5'- uGCGGgCCGCugcaaguacGCCcCCCCCCcCCCCCc -3'
miRNA:   3'- gCGCCgGGCG---------CGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 18992 0.74 0.07171
Target:  5'- cCGCGGCCgccaGCGCCUCgggCCgCGCgCCCCa -3'
miRNA:   3'- -GCGCCGGg---CGCGGAGg--GGgGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 24894 0.74 0.07171
Target:  5'- uGCGGgCCGCugcaaguacGCCcCCCCCCcCCCCCc -3'
miRNA:   3'- gCGCCgGGCG---------CGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 120128 0.74 0.073472
Target:  5'- cCGCGGCUCGCGCggCCCCaCCGCggCCg -3'
miRNA:   3'- -GCGCCGGGCGCGgaGGGG-GGCGggGG- -5'
6514 3' -71 NC_001847.1 + 112760 0.74 0.073472
Target:  5'- cCGCGGCCCggGCGCUUCUgCCCCgaggacuggcGCCCCg -3'
miRNA:   3'- -GCGCCGGG--CGCGGAGG-GGGG----------CGGGGg -5'
6514 3' -71 NC_001847.1 + 6949 0.74 0.073472
Target:  5'- cCGCGGUcccccuCCGC-CCUgCCgCCGCCCCCu -3'
miRNA:   3'- -GCGCCG------GGCGcGGAgGGgGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.