miRNA display CGI


Results 101 - 120 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 57668 0.74 0.075276
Target:  5'- gGCGGgCCGgGCCgggcgCCCggcgCCCGCCCCa -3'
miRNA:   3'- gCGCCgGGCgCGGa----GGG----GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 34588 0.74 0.075276
Target:  5'- gGCGGCaauaaucgCCGCgGCCggCUCCCCGCCCaCCc -3'
miRNA:   3'- gCGCCG--------GGCG-CGGa-GGGGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 107595 0.74 0.076564
Target:  5'- uGCGGCucccagccgCCGCGCCgccguucucgggcgUCCCCgCCGCCgCCg -3'
miRNA:   3'- gCGCCG---------GGCGCGG--------------AGGGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 133046 0.74 0.077122
Target:  5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 30233 0.74 0.077122
Target:  5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 99426 0.74 0.078251
Target:  5'- cCGCGGCCacguccagcuccgGCGCCUCCUCCacgGCCgCCa -3'
miRNA:   3'- -GCGCCGGg------------CGCGGAGGGGGg--CGGgGG- -5'
6514 3' -71 NC_001847.1 + 80749 0.74 0.079012
Target:  5'- gGCGGCgCC-CGCCUCgCCCgcggCCGCCCgCCg -3'
miRNA:   3'- gCGCCG-GGcGCGGAG-GGG----GGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 39862 0.74 0.079012
Target:  5'- aGCGGCCgcaaGCuuGCCggcgCCCCCgaucgCGCCCCCg -3'
miRNA:   3'- gCGCCGGg---CG--CGGa---GGGGG-----GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 109762 0.74 0.080946
Target:  5'- cCGCGGUCC-C-CCUCCgCCCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGcGcGGAGGgGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 38718 0.74 0.080946
Target:  5'- cCGgGG-CCGCGCCUgCCgCCGgCCCCg -3'
miRNA:   3'- -GCgCCgGGCGCGGAgGGgGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 14210 0.74 0.082925
Target:  5'- aGCcaccacGCCCGCGCgC-CCgCCCCGCCCUCg -3'
miRNA:   3'- gCGc-----CGGGCGCG-GaGG-GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 51868 0.74 0.082925
Target:  5'- cCGCaGGUgUGCGCCUCUgCgCCCGCCCCg -3'
miRNA:   3'- -GCG-CCGgGCGCGGAGG-G-GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 64881 0.74 0.082925
Target:  5'- gCGCGccgagagcaacGCCgCGCGCCcgCCgCCCGCCCCg -3'
miRNA:   3'- -GCGC-----------CGG-GCGCGGa-GGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 64769 0.74 0.082925
Target:  5'- gCGCGaGCUCGCGCCccggcgCCCCCuCGCUCUUg -3'
miRNA:   3'- -GCGC-CGGGCGCGGa-----GGGGG-GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 135074 0.74 0.083729
Target:  5'- aGCgGGCCCGgGCCcgccgcgccgaaauuUCCgCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGGCgCGG---------------AGG-GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 32261 0.74 0.083729
Target:  5'- aGCgGGCCCGgGCCcgccgcgccgaaauuUCCgCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGGCgCGG---------------AGG-GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 101300 0.73 0.08495
Target:  5'- cCGCGGUcucucccgCCGCGaCUCCCaagCCCGCUCCCc -3'
miRNA:   3'- -GCGCCG--------GGCGCgGAGGG---GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 60752 0.73 0.08495
Target:  5'- gCGCGGCggCCGCGCggUCCCCCagCGCCUCUa -3'
miRNA:   3'- -GCGCCG--GGCGCGg-AGGGGG--GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 122020 0.73 0.087022
Target:  5'- gGCGGCgCgGCGCCgCCCgCgCGCCCCg -3'
miRNA:   3'- gCGCCG-GgCGCGGaGGGgG-GCGGGGg -5'
6514 3' -71 NC_001847.1 + 87585 0.73 0.087022
Target:  5'- gCGCGGCcgCCGgG-CUCCCCgCGCCCgCCg -3'
miRNA:   3'- -GCGCCG--GGCgCgGAGGGGgGCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.