miRNA display CGI


Results 121 - 140 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 107420 0.73 0.087022
Target:  5'- cCGCGGCuuCCGcCGCUgacgCCCuuGCCCCCg -3'
miRNA:   3'- -GCGCCG--GGC-GCGGag--GGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4932 0.73 0.087022
Target:  5'- cCGCGcuuCCCGCGCC-CUCCgCGCCgCCCg -3'
miRNA:   3'- -GCGCc--GGGCGCGGaGGGGgGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 87585 0.73 0.087022
Target:  5'- gCGCGGCcgCCGgG-CUCCCCgCGCCCgCCg -3'
miRNA:   3'- -GCGCCG--GGCgCgGAGGGGgGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 21078 0.73 0.087022
Target:  5'- gCGgGGCCCGacugucccCUUCCCCCCuCCCCCc -3'
miRNA:   3'- -GCgCCGGGCgc------GGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 40207 0.73 0.087864
Target:  5'- uGCGGCCCGaguugGCCUgcagccauuuuuccaCCCCCaGCCCCg -3'
miRNA:   3'- gCGCCGGGCg----CGGA---------------GGGGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 63603 0.73 0.088928
Target:  5'- cCGUGGCCgCGUGCCUcugcuacCCCUUCGCCCgCu -3'
miRNA:   3'- -GCGCCGG-GCGCGGA-------GGGGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 99509 0.73 0.089142
Target:  5'- gCGCGGUCCaGCGCUggCCCCagCGCCgCCg -3'
miRNA:   3'- -GCGCCGGG-CGCGGa-GGGGg-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 16059 0.73 0.089142
Target:  5'- gGCGGCCgCgGCGCCUCUgCUgggCGCCUCCa -3'
miRNA:   3'- gCGCCGG-G-CGCGGAGGgGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4457 0.73 0.093531
Target:  5'- cCGCGacGUCCGCGuCCUcggcgCCCCCCGCgUCCCu -3'
miRNA:   3'- -GCGC--CGGGCGC-GGA-----GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 107270 0.73 0.093531
Target:  5'- cCGCGacGUCCGCGuCCUcggcgCCCCCCGCgUCCCu -3'
miRNA:   3'- -GCGC--CGGGCGC-GGA-----GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 115511 0.73 0.095801
Target:  5'- aGCGGCCgCGCGCCgaCgCCgGCgCCCCg -3'
miRNA:   3'- gCGCCGG-GCGCGGagGgGGgCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 105575 0.73 0.095801
Target:  5'- gGCGGCgCCgGCGCCggcgCCCCCgccggcgGCCUCCa -3'
miRNA:   3'- gCGCCG-GG-CGCGGa---GGGGGg------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 85539 0.73 0.095801
Target:  5'- gGUGGCgCGCGCCgagcUCCCgCUGCgCCCa -3'
miRNA:   3'- gCGCCGgGCGCGG----AGGGgGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 2762 0.73 0.095801
Target:  5'- gGCGGCgCCgGCGCCggcgCCCCCgccggcgGCCUCCa -3'
miRNA:   3'- gCGCCG-GG-CGCGGa---GGGGGg------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 128171 0.73 0.097422
Target:  5'- gGCGGCCCGCcgggcggaagcgccGCCgcgaCCCCgCGCCuggCCCg -3'
miRNA:   3'- gCGCCGGGCG--------------CGGa---GGGGgGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 60103 0.73 0.097422
Target:  5'- gGCaGCCUcccgcccaccgacgGCGCCUucugcccgcuggCCCCCCGCCCgCCg -3'
miRNA:   3'- gCGcCGGG--------------CGCGGA------------GGGGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 133219 0.73 0.098124
Target:  5'- cCGCGcGCCgGCuaaGCCUCgCCaCCUGCCCCg -3'
miRNA:   3'- -GCGC-CGGgCG---CGGAG-GG-GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 101494 0.73 0.098124
Target:  5'- cCGCGGCCacgcgcgcgCGCGCCUCgcggucagCCgCCGCgCCCg -3'
miRNA:   3'- -GCGCCGG---------GCGCGGAG--------GGgGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 113623 0.72 0.100259
Target:  5'- gCGCguuGGCCCGCGCggCCCCCgccgaggCGCgCCCg -3'
miRNA:   3'- -GCG---CCGGGCGCGgaGGGGG-------GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 10566 0.72 0.100499
Target:  5'- gCGCcgGGCCCgGCGCCggcggcCCCCCCGCgCgCg -3'
miRNA:   3'- -GCG--CCGGG-CGCGGa-----GGGGGGCGgGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.