miRNA display CGI


Results 141 - 160 of 685 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 5946 0.72 0.100499
Target:  5'- aCG-GGCCCGCccgcugcuucuaGCCUCCCCuCCuUCCCCu -3'
miRNA:   3'- -GCgCCGGGCG------------CGGAGGGG-GGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 10566 0.72 0.100499
Target:  5'- gCGCcgGGCCCgGCGCCggcggcCCCCCCGCgCgCg -3'
miRNA:   3'- -GCG--CCGGG-CGCGGa-----GGGGGGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 44371 0.72 0.102684
Target:  5'- uCGCcGUuuGCGCCUCaagggcgCUCCCGCUCCCg -3'
miRNA:   3'- -GCGcCGggCGCGGAG-------GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 119572 0.72 0.102929
Target:  5'- cCGCcGCCUGcCGCCgauggggguUCCCCCgCGCCaCCCg -3'
miRNA:   3'- -GCGcCGGGC-GCGG---------AGGGGG-GCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 101620 0.72 0.102929
Target:  5'- cCGC-GCCCgGCGCCUCcgcggcggcgCCCgCCGCCgCCCg -3'
miRNA:   3'- -GCGcCGGG-CGCGGAG----------GGG-GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 76 0.72 0.102929
Target:  5'- gGCgGGCCCGgGCCcgcUCUgggCUCCGCCCCUg -3'
miRNA:   3'- gCG-CCGGGCgCGG---AGG---GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 285 0.72 0.102929
Target:  5'- cCGcCGaGCCCgcgcggGCGCCgUCCCCgCGCCCCg -3'
miRNA:   3'- -GC-GC-CGGG------CGCGG-AGGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 55689 0.72 0.102929
Target:  5'- gGCGGCCggggaaaacuCGCGCUUCuucgugugCCCgCCGCCCUCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGAG--------GGG-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 102889 0.72 0.102929
Target:  5'- gGCgGGCCCGgGCCcgcUCUgggCUCCGCCCCUg -3'
miRNA:   3'- gCG-CCGGGCgCGG---AGG---GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 103098 0.72 0.102929
Target:  5'- cCGcCGaGCCCgcgcggGCGCCgUCCCCgCGCCCCg -3'
miRNA:   3'- -GC-GC-CGGG------CGCGG-AGGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 32272 0.72 0.103175
Target:  5'- gCGUGGCUCGCGCCguccgcguggcgcggCCCCgcgaCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGa--------------GGGGg---GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 102331 0.72 0.104663
Target:  5'- uGaCGGCCgcguccggcuccaaCGCGCCguccgCCCCCgGCCCUCc -3'
miRNA:   3'- gC-GCCGG--------------GCGCGGa----GGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 52680 0.72 0.105414
Target:  5'- cCGUGGCCgGgGCCgggCCCgCCGCgCCUg -3'
miRNA:   3'- -GCGCCGGgCgCGGa--GGGgGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 1532 0.72 0.105414
Target:  5'- gCGCGcGCuuGUGCCgCCCaagCCCGCCCgCCc -3'
miRNA:   3'- -GCGC-CGggCGCGGaGGG---GGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 13774 0.72 0.105414
Target:  5'- cCGCcuuGCCCGCuCC-CCaCCCCGCCCgCCg -3'
miRNA:   3'- -GCGc--CGGGCGcGGaGG-GGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 59664 0.72 0.105414
Target:  5'- uCGCGcccGCCCGUGCgCUCUggCCCCuCCCCCc -3'
miRNA:   3'- -GCGC---CGGGCGCG-GAGG--GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 92416 0.72 0.105414
Target:  5'- cCGCcGCCCGCGCggCCgCCCGCCgCgCCa -3'
miRNA:   3'- -GCGcCGGGCGCGgaGGgGGGCGG-G-GG- -5'
6514 3' -71 NC_001847.1 + 32021 0.72 0.105414
Target:  5'- gGCGGCCCGCG-CUCgCgCggggaaGCCCCCg -3'
miRNA:   3'- gCGCCGGGCGCgGAGgGgGg-----CGGGGG- -5'
6514 3' -71 NC_001847.1 + 4573 0.72 0.107955
Target:  5'- uCGCuGCucuCCGCGUC-CUCCCCGCCCaCCa -3'
miRNA:   3'- -GCGcCG---GGCGCGGaGGGGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 34051 0.72 0.107955
Target:  5'- aCGCGcccGCCCGCcccGCCga-CCCgGCCCCCg -3'
miRNA:   3'- -GCGC---CGGGCG---CGGaggGGGgCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.