miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 4930 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 63330 0.66 0.274755
Target:  5'- gCGCGGCgUGCuCCUgCUCgCCGCCCa- -3'
miRNA:   3'- -GCGCCGgGCGcGGAgGGG-GGCGGGgg -5'
6514 3' -71 NC_001847.1 + 117330 0.66 0.274755
Target:  5'- cCGCacuGGCaUgGCGcCCUCCCgCCCGCUggggCCCg -3'
miRNA:   3'- -GCG---CCG-GgCGC-GGAGGG-GGGCGG----GGG- -5'
6514 3' -71 NC_001847.1 + 107743 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 3212 0.66 0.274755
Target:  5'- uCGcCGGCgCaCGUGCCUCCgCgCCGCCgCg -3'
miRNA:   3'- -GC-GCCG-G-GCGCGGAGGgG-GGCGGgGg -5'
6514 3' -71 NC_001847.1 + 21723 0.66 0.274755
Target:  5'- aCGCGGCgCCGUugUUCCCCCCgacgcuacGCUgCCg -3'
miRNA:   3'- -GCGCCG-GGCGcgGAGGGGGG--------CGGgGG- -5'
6514 3' -71 NC_001847.1 + 61406 0.66 0.274755
Target:  5'- aGUGGCCCu--CCUCCagCCgGCCCUCg -3'
miRNA:   3'- gCGCCGGGcgcGGAGGg-GGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9549 0.66 0.274168
Target:  5'- gCGUGcGCCaGCGCUgcagccgUCCagCCCGCCgCCCg -3'
miRNA:   3'- -GCGC-CGGgCGCGG-------AGGg-GGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 59348 0.66 0.274168
Target:  5'- gGCGGCgaggucgcgcgCCGCGCCgagCCCgCgGCCguguucaCCCg -3'
miRNA:   3'- gCGCCG-----------GGCGCGGa--GGGgGgCGG-------GGG- -5'
6514 3' -71 NC_001847.1 + 9502 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9827 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 112640 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 112315 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 45451 0.66 0.26893
Target:  5'- gGCaugGGCCCGCGCauaCCCCggGUCCUCg -3'
miRNA:   3'- gCG---CCGGGCGCGga-GGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 77464 0.66 0.26893
Target:  5'- cCGCGGCgcccagcaccaCCGUGCCcaCCgCCUGCCCg- -3'
miRNA:   3'- -GCGCCG-----------GGCGCGGa-GGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 84550 0.66 0.26893
Target:  5'- gCGgGGCgUGCGCCUCgUacaCgGCCUCCu -3'
miRNA:   3'- -GCgCCGgGCGCGGAGgGg--GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 115412 0.66 0.26893
Target:  5'- aGCGGCCCGcCGCgUCCggccaaCCUCGUCgCg -3'
miRNA:   3'- gCGCCGGGC-GCGgAGG------GGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 2586 0.66 0.26893
Target:  5'- gCGCGGCcgCCGCgGCCgcacgcgagCCCgCCGCgCCg -3'
miRNA:   3'- -GCGCCG--GGCG-CGGa--------GGGgGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 29460 0.66 0.26893
Target:  5'- cCGCGGCCgaaGCGCCgCCCgCgGCCg-- -3'
miRNA:   3'- -GCGCCGGg--CGCGGaGGGgGgCGGggg -5'
6514 3' -71 NC_001847.1 + 66511 0.66 0.26893
Target:  5'- gCGCGGUggaggCGCGCCgccuugcggUCCCCgGCCCgCu -3'
miRNA:   3'- -GCGCCGg----GCGCGGa--------GGGGGgCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.