miRNA display CGI


Results 101 - 120 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 115412 0.66 0.26893
Target:  5'- aGCGGCCCGcCGCgUCCggccaaCCUCGUCgCg -3'
miRNA:   3'- gCGCCGGGC-GCGgAGG------GGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 45451 0.66 0.26893
Target:  5'- gGCaugGGCCCGCGCauaCCCCggGUCCUCg -3'
miRNA:   3'- gCG---CCGGGCGCGga-GGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 84550 0.66 0.26893
Target:  5'- gCGgGGCgUGCGCCUCgUacaCgGCCUCCu -3'
miRNA:   3'- -GCgCCGgGCGCGGAGgGg--GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 69870 0.66 0.267202
Target:  5'- aCGUaGGCCCGCcgcugcggaccgGCCgcgggCCCggguggcggaaaagCgCCGCCCCCg -3'
miRNA:   3'- -GCG-CCGGGCG------------CGGa----GGG--------------G-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 104545 0.67 0.265483
Target:  5'- gGCGGCCCcggggccgcuacgcgGCGguCCUCCuggaCCUCGUCCCa -3'
miRNA:   3'- gCGCCGGG---------------CGC--GGAGG----GGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 62567 0.67 0.265483
Target:  5'- cCGCGGCCgcgguugcucggcuuUGCGUUUgCCCCgcggcgauCGCCCCg -3'
miRNA:   3'- -GCGCCGG---------------GCGCGGAgGGGG--------GCGGGGg -5'
6514 3' -71 NC_001847.1 + 105703 0.67 0.263205
Target:  5'- cCGCGGgCgGCGCCacgCCCCagCGCUCgCu -3'
miRNA:   3'- -GCGCCgGgCGCGGa--GGGGg-GCGGGgG- -5'
6514 3' -71 NC_001847.1 + 105505 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 132568 0.67 0.263205
Target:  5'- cCGCGGCggCCGCGCaggCgCCCgCGCCgaagacagCCCg -3'
miRNA:   3'- -GCGCCG--GGCGCGga-G-GGGgGCGG--------GGG- -5'
6514 3' -71 NC_001847.1 + 37286 0.67 0.263205
Target:  5'- aCGCGGgCC--GCCUUUCCCCGUCCg- -3'
miRNA:   3'- -GCGCCgGGcgCGGAGGGGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 120699 0.67 0.263205
Target:  5'- cCGCGG-CCGCGCa--CCCCgGCgCCg -3'
miRNA:   3'- -GCGCCgGGCGCGgagGGGGgCGgGGg -5'
6514 3' -71 NC_001847.1 + 65060 0.67 0.263205
Target:  5'- uGUGGCCCGUGuCCUacaUCCCCGCa--- -3'
miRNA:   3'- gCGCCGGGCGC-GGAg--GGGGGCGgggg -5'
6514 3' -71 NC_001847.1 + 106720 0.67 0.263205
Target:  5'- gGCGGCgUGCGCCagggcgCUaagCCCCGCCUg- -3'
miRNA:   3'- gCGCCGgGCGCGGa-----GG---GGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 115240 0.67 0.263205
Target:  5'- gGCGacGCCCucguGCGCUUCUaCCUCGCgCCCg -3'
miRNA:   3'- gCGC--CGGG----CGCGGAGG-GGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 38224 0.67 0.263205
Target:  5'- cCG-GGCCgCGCGCCUCUacgcggCCGCCaguCCCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGAGGgg----GGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 99215 0.67 0.263205
Target:  5'- gCGCGGCggCGCGCCgccacaaagagcUCCCacgcgCCGUCCCa -3'
miRNA:   3'- -GCGCCGg-GCGCGG------------AGGGg----GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 82639 0.67 0.263205
Target:  5'- gCGCGG-CCGCGCgCUCCgUCaGCUCCa -3'
miRNA:   3'- -GCGCCgGGCGCG-GAGGgGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 2692 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 92224 0.67 0.263205
Target:  5'- gGCGGCCagcagCGCGCgCUCUCgagCCGCCUgCa -3'
miRNA:   3'- gCGCCGG-----GCGCG-GAGGGg--GGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 1158 0.67 0.263205
Target:  5'- cCGauGCCgCGCGCgCUCCCa--GCCCCg -3'
miRNA:   3'- -GCgcCGG-GCGCG-GAGGGgggCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.