miRNA display CGI


Results 121 - 140 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 115240 0.67 0.263205
Target:  5'- gGCGacGCCCucguGCGCUUCUaCCUCGCgCCCg -3'
miRNA:   3'- gCGC--CGGG----CGCGGAGG-GGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 38224 0.67 0.263205
Target:  5'- cCG-GGCCgCGCGCCUCUacgcggCCGCCaguCCCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGAGGgg----GGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 132568 0.67 0.263205
Target:  5'- cCGCGGCggCCGCGCaggCgCCCgCGCCgaagacagCCCg -3'
miRNA:   3'- -GCGCCG--GGCGCGga-G-GGGgGCGG--------GGG- -5'
6514 3' -71 NC_001847.1 + 39589 0.67 0.262072
Target:  5'- gGUGGCCCcaGCGCUgcugcggcgcggCCCCa-GCCCCa -3'
miRNA:   3'- gCGCCGGG--CGCGGa-----------GGGGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 33329 0.67 0.260943
Target:  5'- uCGUGGCggCGCGCUgcgugacggugggCCCCUCGCaCCUCa -3'
miRNA:   3'- -GCGCCGg-GCGCGGa------------GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 30064 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 132877 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 93802 0.67 0.257579
Target:  5'- gCGCGGCCgCGCgGCCgagUCCCCGCUg-- -3'
miRNA:   3'- -GCGCCGG-GCG-CGGag-GGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 29899 0.67 0.257579
Target:  5'- gGCGGCCC-UGCCggCCgCCGCggggggCCCCu -3'
miRNA:   3'- gCGCCGGGcGCGGagGGgGGCG------GGGG- -5'
6514 3' -71 NC_001847.1 + 56844 0.67 0.257579
Target:  5'- gGCGGCCCa-GCCgCCCgagcaCCGCCUCg -3'
miRNA:   3'- gCGCCGGGcgCGGaGGGg----GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 31578 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 82555 0.67 0.257579
Target:  5'- cCGCgGGCUCG-GCCUCggCCgCCGCCUCg -3'
miRNA:   3'- -GCG-CCGGGCgCGGAG--GGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 58391 0.67 0.257579
Target:  5'- uGCGuGCCCcccgcccgaGCGCCcgaccgUCCuuCCCCGCCCgaCCg -3'
miRNA:   3'- gCGC-CGGG---------CGCGG------AGG--GGGGCGGG--GG- -5'
6514 3' -71 NC_001847.1 + 134391 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 81819 0.67 0.257579
Target:  5'- gGCGGCggggCGCGCCgUCUgUCGCCCgCCg -3'
miRNA:   3'- gCGCCGg---GCGCGGaGGGgGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 48709 0.67 0.257579
Target:  5'- aCGCuGCCCGCGCCgCgCagCGCCgCCa -3'
miRNA:   3'- -GCGcCGGGCGCGGaGgGggGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 50382 0.67 0.254251
Target:  5'- gGaCGGCgCCGCcgccgGCUUCCaCCgcuucuaccagaucgCCGCCCCCu -3'
miRNA:   3'- gC-GCCG-GGCG-----CGGAGG-GG---------------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 96873 0.67 0.252053
Target:  5'- gGCGGUCCGCGCUggggagggaCCgCCGUgCUCg -3'
miRNA:   3'- gCGCCGGGCGCGGag-------GGgGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 44275 0.67 0.252053
Target:  5'- -aCGGcCCCG-GCCUCgacaccagCCCCgGCCCCg -3'
miRNA:   3'- gcGCC-GGGCgCGGAG--------GGGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 12089 0.67 0.252053
Target:  5'- cCGCGgguccggcGCCCGCgGCCguaCUUCCagcgGCCCCCg -3'
miRNA:   3'- -GCGC--------CGGGCG-CGGa--GGGGGg---CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.