miRNA display CGI


Results 41 - 60 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 4276 0.7 0.157194
Target:  5'- -uCGGCCUugagggGCGCCg-CCCCCGCCUCg -3'
miRNA:   3'- gcGCCGGG------CGCGGagGGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 4340 0.7 0.164617
Target:  5'- cCGCGGCC---GCCUCCgCCCCGgCCgCg -3'
miRNA:   3'- -GCGCCGGgcgCGGAGG-GGGGCgGGgG- -5'
6514 3' -71 NC_001847.1 + 4397 0.8 0.026114
Target:  5'- cCGCGGCCCaggcgcuguccGCGuCCUccgcgCCCUCCGCCCCCu -3'
miRNA:   3'- -GCGCCGGG-----------CGC-GGA-----GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4457 0.73 0.093531
Target:  5'- cCGCGacGUCCGCGuCCUcggcgCCCCCCGCgUCCCu -3'
miRNA:   3'- -GCGC--CGGGCGC-GGA-----GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 4525 0.69 0.193128
Target:  5'- -uCGGCCUcgGCGCCcucgguggCCCCCgCGUCUCCg -3'
miRNA:   3'- gcGCCGGG--CGCGGa-------GGGGG-GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4573 0.72 0.107955
Target:  5'- uCGCuGCucuCCGCGUC-CUCCCCGCCCaCCa -3'
miRNA:   3'- -GCGcCG---GGCGCGGaGGGGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 4632 0.67 0.246624
Target:  5'- gGCGGCCCgccggcgcucgcGCGCCUCagCCCgaCGCgCCg -3'
miRNA:   3'- gCGCCGGG------------CGCGGAGg-GGG--GCGgGGg -5'
6514 3' -71 NC_001847.1 + 4678 0.7 0.139945
Target:  5'- aGCaGGgCCGgGUCUUCCUCCgaGCCCCCc -3'
miRNA:   3'- gCG-CCgGGCgCGGAGGGGGG--CGGGGG- -5'
6514 3' -71 NC_001847.1 + 4930 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 4932 0.73 0.087022
Target:  5'- cCGCGcuuCCCGCGCC-CUCCgCGCCgCCCg -3'
miRNA:   3'- -GCGCc--GGGCGCGGaGGGGgGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 5087 0.7 0.164617
Target:  5'- gGCGGCagugCgGCGCCUUCUCCUuCCCCUu -3'
miRNA:   3'- gCGCCG----GgCGCGGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 5467 0.72 0.115654
Target:  5'- gGCGG-CCGCGUCUCUcuccuuuCCCCGCgCCUCu -3'
miRNA:   3'- gCGCCgGGCGCGGAGG-------GGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 5630 0.66 0.274755
Target:  5'- cCGCGGuCCCGCGCgCgCCaaagagCCCGUCCa- -3'
miRNA:   3'- -GCGCC-GGGCGCG-GaGGg-----GGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 5857 0.71 0.120402
Target:  5'- --aGGCCCGCcccuaccaguuccCCUCCCcauuCCCGCCCCUg -3'
miRNA:   3'- gcgCCGGGCGc------------GGAGGG----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 5946 0.72 0.100499
Target:  5'- aCG-GGCCCGCccgcugcuucuaGCCUCCCCuCCuUCCCCu -3'
miRNA:   3'- -GCgCCGGGCG------------CGGAGGGG-GGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 6224 0.79 0.031077
Target:  5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3'
miRNA:   3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 6335 0.76 0.054825
Target:  5'- uGCGcGCCUGCGCg-CCCgCCCGCCCgCCc -3'
miRNA:   3'- gCGC-CGGGCGCGgaGGG-GGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 6376 0.69 0.192256
Target:  5'- cCGCGGCCCccuuuggcccuagccGCuccauucucuccacgGCCaccaCCCCCCuCCCCCu -3'
miRNA:   3'- -GCGCCGGG---------------CG---------------CGGa---GGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 6589 0.7 0.164617
Target:  5'- cCGCGGCCC-UGCCUCCCUacuuUUGCCugugugaagggCCCa -3'
miRNA:   3'- -GCGCCGGGcGCGGAGGGG----GGCGG-----------GGG- -5'
6514 3' -71 NC_001847.1 + 6949 0.74 0.073472
Target:  5'- cCGCGGUcccccuCCGC-CCUgCCgCCGCCCCCu -3'
miRNA:   3'- -GCGCCG------GGCGcGGAgGGgGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.