miRNA display CGI


Results 61 - 80 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 6967 0.69 0.176342
Target:  5'- uCGCGG-CgGCGCUUCCgCCCgcggGCCgCCCa -3'
miRNA:   3'- -GCGCCgGgCGCGGAGGgGGG----CGG-GGG- -5'
6514 3' -71 NC_001847.1 + 7485 0.69 0.173939
Target:  5'- gCGCGucGCCaccagaugGCGCCaUCCCCCUcccacucgggucguaGCCCCCc -3'
miRNA:   3'- -GCGC--CGGg-------CGCGG-AGGGGGG---------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 7769 0.71 0.130446
Target:  5'- cCGaCGGCCguugGUGCCgaggcucgggCCCCgCCGCCCCUg -3'
miRNA:   3'- -GC-GCCGGg---CGCGGa---------GGGG-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 7915 0.7 0.160867
Target:  5'- gGCGGCcgCCGCuUCUUCCCCCGCCg-- -3'
miRNA:   3'- gCGCCG--GGCGcGGAGGGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 7980 0.7 0.156831
Target:  5'- --gGGCCUGCucggGCC-CCCCCuccacuuggacauCGCCCCCg -3'
miRNA:   3'- gcgCCGGGCG----CGGaGGGGG-------------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9502 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9549 0.66 0.274168
Target:  5'- gCGUGcGCCaGCGCUgcagccgUCCagCCCGCCgCCCg -3'
miRNA:   3'- -GCGC-CGGgCGCGG-------AGGg-GGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 9639 0.7 0.141259
Target:  5'- gCGcCGGCCCGCcgcucgagcagccggGCgUCCUCgCGCCCgCCg -3'
miRNA:   3'- -GC-GCCGGGCG---------------CGgAGGGGgGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 9693 0.69 0.168445
Target:  5'- gGCaaGCCCGC-CCUCCCCggaCGCgCCCu -3'
miRNA:   3'- gCGc-CGGGCGcGGAGGGGg--GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 9763 0.71 0.133544
Target:  5'- cCGgGGCgcccgcuuaCCGCuCCUCCUcuucucuguCCCGCCCCCu -3'
miRNA:   3'- -GCgCCG---------GGCGcGGAGGG---------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9827 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 9893 0.7 0.164617
Target:  5'- cCGCucGCCCGaccgcgugGUCUCgggCCCCGCCCCCg -3'
miRNA:   3'- -GCGc-CGGGCg-------CGGAGg--GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9947 0.77 0.048491
Target:  5'- cCGCGGCCCGgGCg-CCUUCUGCCCCg -3'
miRNA:   3'- -GCGCCGGGCgCGgaGGGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 10209 0.68 0.202035
Target:  5'- cCGCcgGGCCCagggcGCGCC-CgCUgUCGCCCCCg -3'
miRNA:   3'- -GCG--CCGGG-----CGCGGaG-GGgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 10355 0.7 0.153242
Target:  5'- gGCGGCgagggggCCGcCGCCgaaagCCCCCCccgguGCCgCCCg -3'
miRNA:   3'- gCGCCG-------GGC-GCGGa----GGGGGG-----CGG-GGG- -5'
6514 3' -71 NC_001847.1 + 10404 0.72 0.113211
Target:  5'- cCGCGGUCCuCuCCUCCgCCUCGCCCgCg -3'
miRNA:   3'- -GCGCCGGGcGcGGAGG-GGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 10424 0.79 0.032658
Target:  5'- gCGCGGUUCGCGCUgccgCCCCCGCgCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGag--GGGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 10482 0.66 0.305397
Target:  5'- uGCaGGCCgagcUGgGCUUCCCCgaCGgCCCCg -3'
miRNA:   3'- gCG-CCGG----GCgCGGAGGGGg-GCgGGGG- -5'
6514 3' -71 NC_001847.1 + 10566 0.72 0.100499
Target:  5'- gCGCcgGGCCCgGCGCCggcggcCCCCCCGCgCgCg -3'
miRNA:   3'- -GCG--CCGGG-CGCGGa-----GGGGGGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 10609 0.76 0.053366
Target:  5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3'
miRNA:   3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.