miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 10706 0.76 0.053497
Target:  5'- gCGCGGCCCGCGCCggCCaagCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGCGCGGagGGgg-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 10757 0.76 0.056185
Target:  5'- cCGCGGCCCccucucccGC-CCUCUCCCCGgCCCUu -3'
miRNA:   3'- -GCGCCGGG--------CGcGGAGGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 10939 0.66 0.305397
Target:  5'- gGcCGGCCCGaauccCCUCCUUCCcCUCCCu -3'
miRNA:   3'- gC-GCCGGGCgc---GGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 11628 0.68 0.206621
Target:  5'- aGcCGaGCCCGCGgCagCCCUgGCCCCg -3'
miRNA:   3'- gC-GC-CGGGCGCgGagGGGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 11971 0.69 0.180413
Target:  5'- gGCGGCUgaGCGCCgCCgCgCCGUCUCCg -3'
miRNA:   3'- gCGCCGGg-CGCGGaGGgG-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 12089 0.67 0.252053
Target:  5'- cCGCGgguccggcGCCCGCgGCCguaCUUCCagcgGCCCCCg -3'
miRNA:   3'- -GCGC--------CGGGCG-CGGa--GGGGGg---CGGGGG- -5'
6514 3' -71 NC_001847.1 + 12747 0.67 0.246624
Target:  5'- uGCGGCCCaGCGCCUUCUUCgCGCa--- -3'
miRNA:   3'- gCGCCGGG-CGCGGAGGGGG-GCGgggg -5'
6514 3' -71 NC_001847.1 + 12971 0.69 0.17594
Target:  5'- gGUGGCCCGguCGCugguuccCUCUCCUCGUCCCg -3'
miRNA:   3'- gCGCCGGGC--GCG-------GAGGGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 13131 0.72 0.115928
Target:  5'- gGCGGCgCCGCGCCgCCUgCCGCggCCg -3'
miRNA:   3'- gCGCCG-GGCGCGGaGGGgGGCGggGG- -5'
6514 3' -71 NC_001847.1 + 13733 0.72 0.115654
Target:  5'- -aCGGCuCCGC-CCUCCacgcagcUCCUGCCCCCg -3'
miRNA:   3'- gcGCCG-GGCGcGGAGG-------GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 13774 0.72 0.105414
Target:  5'- cCGCcuuGCCCGCuCC-CCaCCCCGCCCgCCg -3'
miRNA:   3'- -GCGc--CGGGCGcGGaGG-GGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 13939 0.67 0.246624
Target:  5'- cCGCGGCagggGgGCCgCCCCgcgcaagugCCGCCCCg -3'
miRNA:   3'- -GCGCCGgg--CgCGGaGGGG---------GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 13961 0.69 0.168445
Target:  5'- uGCGGCCCGUgggaGCCcgCCCCUgGCCg-- -3'
miRNA:   3'- gCGCCGGGCG----CGGa-GGGGGgCGGggg -5'
6514 3' -71 NC_001847.1 + 14210 0.74 0.082925
Target:  5'- aGCcaccacGCCCGCGCgC-CCgCCCCGCCCUCg -3'
miRNA:   3'- gCGc-----CGGGCGCG-GaGG-GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 14308 0.69 0.184566
Target:  5'- uCGCGGCCC-CG-CUCCCgCUGCUCgCg -3'
miRNA:   3'- -GCGCCGGGcGCgGAGGGgGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 14454 0.66 0.299065
Target:  5'- gCGCGGCCgcgcugcucggCGUGCgCUCCaaCgCCGUCCCg -3'
miRNA:   3'- -GCGCCGG-----------GCGCG-GAGG--GgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 15582 0.68 0.211296
Target:  5'- cCGCuGCCCGCagagucugGCCgcgcgCCCCuuGCCCagCCu -3'
miRNA:   3'- -GCGcCGGGCG--------CGGa----GGGGggCGGG--GG- -5'
6514 3' -71 NC_001847.1 + 15908 0.75 0.063491
Target:  5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 15968 0.71 0.121545
Target:  5'- uGaCGGuCCCaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- gC-GCC-GGGcGCGGA-GGGG-GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 16027 0.75 0.063491
Target:  5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3'
miRNA:   3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.