miRNA display CGI


Results 101 - 120 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 16059 0.73 0.089142
Target:  5'- gGCGGCCgCgGCGCCUCUgCUgggCGCCUCCa -3'
miRNA:   3'- gCGCCGG-G-CGCGGAGGgGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 16232 0.72 0.107955
Target:  5'- cCGCGuCCCG-GCCUCggCCCCgGCCCCg -3'
miRNA:   3'- -GCGCcGGGCgCGGAG--GGGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 16308 0.67 0.230917
Target:  5'- uCGC-GCUCGCGCCcucggCUCCgCGCCCUa -3'
miRNA:   3'- -GCGcCGGGCGCGGa----GGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 16467 0.8 0.026772
Target:  5'- uGCGGCCCG-GCCcaaCCCCCGCCCUg -3'
miRNA:   3'- gCGCCGGGCgCGGag-GGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 17673 0.66 0.305397
Target:  5'- gGCGGCUCGCgguccGCCgggCaCCaCCGUCUCCg -3'
miRNA:   3'- gCGCCGGGCG-----CGGa--GgGG-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 17814 0.66 0.299065
Target:  5'- gGgGGCgaG-GCCgCCCCCCGCCgCUa -3'
miRNA:   3'- gCgCCGggCgCGGaGGGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 17849 0.7 0.164617
Target:  5'- uCGCGGCUCGCguugccagcgccGCCgggUCgCCCGUCCUCg -3'
miRNA:   3'- -GCGCCGGGCG------------CGGa--GGgGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 18094 0.66 0.280681
Target:  5'- gGCgaGGCUUcCGCCUCCUCggcgaGCCCCCg -3'
miRNA:   3'- gCG--CCGGGcGCGGAGGGGgg---CGGGGG- -5'
6514 3' -71 NC_001847.1 + 18374 0.71 0.118706
Target:  5'- gGCgGGCCCGaUGCCUCggcgUCCUCGCCCUg -3'
miRNA:   3'- gCG-CCGGGC-GCGGAG----GGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 18693 0.68 0.202035
Target:  5'- cCGCGccgcGCgUGCGCCagcgCCCaCCGCCCUCg -3'
miRNA:   3'- -GCGC----CGgGCGCGGa---GGGgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 18737 0.67 0.252053
Target:  5'- gCGCGGCCCGgGg--CCCagagcgCCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGCgCggaGGGg-----GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 18992 0.74 0.07171
Target:  5'- cCGCGGCCgccaGCGCCUCgggCCgCGCgCCCCa -3'
miRNA:   3'- -GCGCCGGg---CGCGGAGg--GGgGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 19361 0.68 0.213192
Target:  5'- aGCGGCuCCGCgaacgcucuggccgaGCCggCUCCCCGCUCg- -3'
miRNA:   3'- gCGCCG-GGCG---------------CGGa-GGGGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 19434 0.72 0.112943
Target:  5'- gGCGGCaagcgcacacgggCCGCaGCCggCUCUCGCCCCCg -3'
miRNA:   3'- gCGCCG-------------GGCG-CGGagGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 19444 0.7 0.153597
Target:  5'- cCGCGcGCCCGCuGCCgggCCagCCGCUCCg -3'
miRNA:   3'- -GCGC-CGGGCG-CGGa--GGggGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 20092 0.7 0.157194
Target:  5'- gCGCGGCCCGgccauCGCUagCCCguggCCGCCCUa -3'
miRNA:   3'- -GCGCCGGGC-----GCGGagGGG----GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 20197 0.66 0.305397
Target:  5'- cCGCgGGgCgGCGCC-CCgCCCCGCCa-- -3'
miRNA:   3'- -GCG-CCgGgCGCGGaGG-GGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 20224 0.71 0.121545
Target:  5'- aCGCGaGCCCccGUGCC-CCaggggCUCGCCCCCg -3'
miRNA:   3'- -GCGC-CGGG--CGCGGaGGg----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 21078 0.73 0.087022
Target:  5'- gCGgGGCCCGacugucccCUUCCCCCCuCCCCCc -3'
miRNA:   3'- -GCgCCGGGCgc------GGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 21439 0.69 0.188804
Target:  5'- aGCGGgCCaaagcucCGgCUCCCCCUuCCCCCu -3'
miRNA:   3'- gCGCCgGGc------GCgGAGGGGGGcGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.