miRNA display CGI


Results 121 - 140 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 21587 0.66 0.280681
Target:  5'- aGgGGgCCGCGggg--CCCCGCCCCCc -3'
miRNA:   3'- gCgCCgGGCGCggaggGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 21723 0.66 0.274755
Target:  5'- aCGCGGCgCCGUugUUCCCCCCgacgcuacGCUgCCg -3'
miRNA:   3'- -GCGCCG-GGCGcgGAGGGGGG--------CGGgGG- -5'
6514 3' -71 NC_001847.1 + 21733 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 21982 0.71 0.127414
Target:  5'- gGCGGCCCccuCGCCgccguucuccUCCCCcuccucguCCGCCUCCu -3'
miRNA:   3'- gCGCCGGGc--GCGG----------AGGGG--------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 23031 0.7 0.14325
Target:  5'- cCGCGGCCaCGCGCCgcucgagccagUCCaCCuuGCgCCg -3'
miRNA:   3'- -GCGCCGG-GCGCGG-----------AGG-GGggCGgGGg -5'
6514 3' -71 NC_001847.1 + 23316 0.67 0.246624
Target:  5'- uGgGGuCCCGagugaGCUccgCCCaCCCaGCCCCCa -3'
miRNA:   3'- gCgCC-GGGCg----CGGa--GGG-GGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 23638 0.67 0.241292
Target:  5'- aGUGcGCCC-C-CCUCCUCuaGCCCCCc -3'
miRNA:   3'- gCGC-CGGGcGcGGAGGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 23689 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 23751 0.67 0.230917
Target:  5'- gGCGgggccugauuuGCCUGUGCCcUCCCaCCGUCCCg -3'
miRNA:   3'- gCGC-----------CGGGCGCGG-AGGGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 23846 0.71 0.118706
Target:  5'- aGgGGCCC-CGCC-CCCggccgagcgCCGCCCCCg -3'
miRNA:   3'- gCgCCGGGcGCGGaGGGg--------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 23876 0.7 0.160867
Target:  5'- -nCGGCCCgGCGCCgCCUCcgacccggcgCCGCCUCCg -3'
miRNA:   3'- gcGCCGGG-CGCGGaGGGG----------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 24195 0.67 0.246624
Target:  5'- cCGCgaGGCUCGuCGgC-CCgCCCGCCCCg -3'
miRNA:   3'- -GCG--CCGGGC-GCgGaGGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 24239 0.66 0.280681
Target:  5'- aCGUgGGUCgGCGCCUCgCCgUgguggacagGCCCCCc -3'
miRNA:   3'- -GCG-CCGGgCGCGGAGgGGgG---------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 24691 0.67 0.246624
Target:  5'- -aCGGUCuCGaCGCCUagCCCCUCGCgCUCCa -3'
miRNA:   3'- gcGCCGG-GC-GCGGA--GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 24894 0.74 0.07171
Target:  5'- uGCGGgCCGCugcaaguacGCCcCCCCCCcCCCCCc -3'
miRNA:   3'- gCGCCgGGCG---------CGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 25366 0.69 0.193128
Target:  5'- uCGCGGCgauCCGCacgaagaacugGCCcauagacucgaUCgCCCCGCCCUCg -3'
miRNA:   3'- -GCGCCG---GGCG-----------CGG-----------AGgGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 25474 0.77 0.048491
Target:  5'- gGCgGGCCaaagcaaGCGCCgCCCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGg------CGCGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 25849 0.66 0.305397
Target:  5'- aCGCGucGCUCGCcaucuugcucGCCcCCCucgcuugcagCCCGCCCCUg -3'
miRNA:   3'- -GCGC--CGGGCG----------CGGaGGG----------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 26498 0.76 0.054423
Target:  5'- cCGCGGCCCcggccacuucugcaGCGUCgCCCgCCGUCCCCc -3'
miRNA:   3'- -GCGCCGGG--------------CGCGGaGGGgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 26768 0.66 0.280681
Target:  5'- gCGCGGCCuggucagugcgCGCGCCcUCCUgCGCgCCg -3'
miRNA:   3'- -GCGCCGG-----------GCGCGGaGGGGgGCGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.