Results 141 - 160 of 685 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 27036 | 0.7 | 0.157194 |
Target: 5'- uCGCcGUCgCGCucGCCguaCCCCCGUCCCCg -3' miRNA: 3'- -GCGcCGG-GCG--CGGag-GGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 27061 | 0.7 | 0.160867 |
Target: 5'- --aGGCCCGCaGCC-CCCCgggcggcaCCGCgCCCa -3' miRNA: 3'- gcgCCGGGCG-CGGaGGGG--------GGCGgGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 27307 | 0.69 | 0.176342 |
Target: 5'- gGUcGCCCGaGCUUCCCCuCCGCgCCgCCg -3' miRNA: 3'- gCGcCGGGCgCGGAGGGG-GGCG-GG-GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 27350 | 0.71 | 0.136711 |
Target: 5'- cCGCGGCcgCCGCaGCC-CCagCUGCCCCCc -3' miRNA: 3'- -GCGCCG--GGCG-CGGaGGggGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 27465 | 0.77 | 0.048491 |
Target: 5'- cCGCuGCCCGcCGCCcCCCCCCcUCCCCu -3' miRNA: 3'- -GCGcCGGGC-GCGGaGGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 27500 | 0.72 | 0.107955 |
Target: 5'- uGaCGGCCgGC-CgaCCCaCCCGCCCCCc -3' miRNA: 3'- gC-GCCGGgCGcGgaGGG-GGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28307 | 0.7 | 0.160867 |
Target: 5'- aGCGGCCCcgcgagaggcggGCGCCgggCCCggCGCCCCn -3' miRNA: 3'- gCGCCGGG------------CGCGGa--GGGggGCGGGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28346 | 0.78 | 0.039811 |
Target: 5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3' miRNA: 3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28380 | 0.7 | 0.14325 |
Target: 5'- cCGcCGGagaCgGCGCC-CCCCCCGCCgCg -3' miRNA: 3'- -GC-GCCg--GgCGCGGaGGGGGGCGGgGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28450 | 0.68 | 0.220921 |
Target: 5'- cCGCGGCgCCGCGCgaCgggCCgCCGCCgCUg -3' miRNA: 3'- -GCGCCG-GGCGCGgaG---GGgGGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28512 | 0.7 | 0.164617 |
Target: 5'- gCGUGGCCCggcagcGCGCCg-CCgCCGCCCggCCg -3' miRNA: 3'- -GCGCCGGG------CGCGGagGGgGGCGGG--GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 28974 | 0.7 | 0.157194 |
Target: 5'- uGCGGCgCGCGUacgCCCCCaugGCCuaCCCg -3' miRNA: 3'- gCGCCGgGCGCGga-GGGGGg--CGG--GGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29064 | 0.69 | 0.176342 |
Target: 5'- uCGcCGGCCgcgcgGCGCCggCgCCCCUGCCgCCg -3' miRNA: 3'- -GC-GCCGGg----CGCGGa-G-GGGGGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29179 | 0.69 | 0.168445 |
Target: 5'- gGCGGCCCGCcgcgccGCCggcgCCgCCgGgCUCCCg -3' miRNA: 3'- gCGCCGGGCG------CGGa---GGgGGgC-GGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29460 | 0.66 | 0.26893 |
Target: 5'- cCGCGGCCgaaGCGCCgCCCgCgGCCg-- -3' miRNA: 3'- -GCGCCGGg--CGCGGaGGGgGgCGGggg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29538 | 0.66 | 0.305397 |
Target: 5'- gCGCGGCgCGgGCgCUCgaguuCCCCCGCacggaCgCCg -3' miRNA: 3'- -GCGCCGgGCgCG-GAG-----GGGGGCGg----G-GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29886 | 0.66 | 0.305397 |
Target: 5'- cCGCGGCggaGUGCCUgCCgCCCgaagugCGCCCgCCu -3' miRNA: 3'- -GCGCCGgg-CGCGGA-GG-GGG------GCGGG-GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29899 | 0.67 | 0.257579 |
Target: 5'- gGCGGCCC-UGCCggCCgCCGCggggggCCCCu -3' miRNA: 3'- gCGCCGGGcGCGGagGGgGGCG------GGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 29995 | 0.66 | 0.292835 |
Target: 5'- gCGCGGCgggaGcCGCCgCUgCCCGCCCgCg -3' miRNA: 3'- -GCGCCGgg--C-GCGGaGGgGGGCGGGgG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 30029 | 0.67 | 0.241292 |
Target: 5'- uGgGGCCCaUGCCgCCCggcggcCCCGCCgCCg -3' miRNA: 3'- gCgCCGGGcGCGGaGGG------GGGCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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