miRNA display CGI


Results 161 - 180 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 30064 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 30116 0.67 0.246624
Target:  5'- cCGCGGCgCUgGCgGCCUaCUgCCGCCCCg -3'
miRNA:   3'- -GCGCCG-GG-CG-CGGAgGGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 30154 0.71 0.121545
Target:  5'- gCGCGGCUCGCGgaccacccgcuCUUCCCCgaGCCCUg -3'
miRNA:   3'- -GCGCCGGGCGC-----------GGAGGGGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 30204 0.7 0.150075
Target:  5'- gCGCGGCgCgCGCGCCgaagCCgCgCGCgCCCg -3'
miRNA:   3'- -GCGCCG-G-GCGCGGa---GGgGgGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 30233 0.74 0.077122
Target:  5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 30897 0.71 0.118425
Target:  5'- gGUGGCCaCGCGCCUgggCCCgcgcaccgcggugCCCGUgCCCCg -3'
miRNA:   3'- gCGCCGG-GCGCGGA---GGG-------------GGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 31326 0.67 0.246624
Target:  5'- gGCGGCCugguggagcgCGUGCCgccgCCggcggcggaagCCCCGCCggCCCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGa---GG-----------GGGGCGG--GGG- -5'
6514 3' -71 NC_001847.1 + 31434 0.7 0.153597
Target:  5'- gGCGGCCgGCgGCCgcggcggCCCCggcgcgggCCGCCgCCg -3'
miRNA:   3'- gCGCCGGgCG-CGGa------GGGG--------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 31578 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 31840 0.69 0.188804
Target:  5'- -uUGGCgCGCgGCCgCCCCgCCGCCgCCg -3'
miRNA:   3'- gcGCCGgGCG-CGGaGGGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 31904 0.7 0.150075
Target:  5'- cCGCcGCCgC-CGCCgCCCgCCCGCCCCg -3'
miRNA:   3'- -GCGcCGG-GcGCGGaGGG-GGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 32021 0.72 0.105414
Target:  5'- gGCGGCCCGCG-CUCgCgCggggaaGCCCCCg -3'
miRNA:   3'- gCGCCGGGCGCgGAGgGgGg-----CGGGGG- -5'
6514 3' -71 NC_001847.1 + 32048 0.66 0.286707
Target:  5'- gGC-GCCCGCGCgggCUCggcggCCCCCgggcucggGCCCCUg -3'
miRNA:   3'- gCGcCGGGCGCG---GAG-----GGGGG--------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 32106 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 32117 0.7 0.153597
Target:  5'- uGCGGCCCGCccGCCgCCggcgcugggcgCCgCCGCgCCCg -3'
miRNA:   3'- gCGCCGGGCG--CGGaGG-----------GG-GGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 32156 0.66 0.279487
Target:  5'- gGgGGCCCcggGgGCCaagacgcagaaCCCCgGCCCCCc -3'
miRNA:   3'- gCgCCGGG---CgCGGag---------GGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 32261 0.74 0.083729
Target:  5'- aGCgGGCCCGgGCCcgccgcgccgaaauuUCCgCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGGCgCGG---------------AGG-GGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 32272 0.72 0.103175
Target:  5'- gCGUGGCUCGCGCCguccgcguggcgcggCCCCgcgaCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGa--------------GGGGg---GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 32326 0.68 0.220431
Target:  5'- gGgGGCCCGCGCggCgCggcgcggagggggCCCaGCCCCCg -3'
miRNA:   3'- gCgCCGGGCGCGgaGgG-------------GGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 32447 0.77 0.045038
Target:  5'- uCGCcGCCCGCccggcgcccuGCCcCCgCCCCGCCCCCc -3'
miRNA:   3'- -GCGcCGGGCG----------CGGaGG-GGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.