miRNA display CGI


Results 41 - 60 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 129751 0.69 0.184566
Target:  5'- gCGCGGCCUGUGCCgccggCCgCUCGgaCCgCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGa----GGgGGGCg-GG-GG- -5'
6514 3' -71 NC_001847.1 + 129025 0.7 0.160867
Target:  5'- gGCGGCgaggcgcucgcgCCGCGCCUCgcgggcguCUCgCGCCUCCg -3'
miRNA:   3'- gCGCCG------------GGCGCGGAG--------GGGgGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 128287 0.77 0.048491
Target:  5'- gGCgGGCCaaagcaaGCGCCgCCCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGg------CGCGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 128171 0.73 0.097422
Target:  5'- gGCGGCCCGCcgggcggaagcgccGCCgcgaCCCCgCGCCuggCCCg -3'
miRNA:   3'- gCGCCGGGCG--------------CGGa---GGGGgGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 127862 0.71 0.127414
Target:  5'- aGCGGCUCguacugcggaGCGUCUCgcgugCCCCCGCCgcgCCCg -3'
miRNA:   3'- gCGCCGGG----------CGCGGAG-----GGGGGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 127707 0.74 0.07171
Target:  5'- uGCGGgCCGCugcaaguacGCCcCCCCCCcCCCCCc -3'
miRNA:   3'- gCGCCgGGCG---------CGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 127407 0.68 0.216063
Target:  5'- -cUGGCCgC-CGCCUCCgCgCCCGCgCCCu -3'
miRNA:   3'- gcGCCGG-GcGCGGAGG-G-GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 127052 0.66 0.280681
Target:  5'- aCGUgGGUCgGCGCCUCgCCgUgguggacagGCCCCCc -3'
miRNA:   3'- -GCG-CCGGgCGCGGAGgGGgG---------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 127008 0.67 0.246624
Target:  5'- cCGCgaGGCUCGuCGgC-CCgCCCGCCCCg -3'
miRNA:   3'- -GCG--CCGGGC-GCgGaGGgGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 126986 0.67 0.248783
Target:  5'- cCGCGagcccuucccaacuaGCCCucGCGCagcaCCgCCCGCCCCUg -3'
miRNA:   3'- -GCGC---------------CGGG--CGCGga--GGgGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126689 0.7 0.160867
Target:  5'- -nCGGCCCgGCGCCgCCUCcgacccggcgCCGCCUCCg -3'
miRNA:   3'- gcGCCGGG-CGCGGaGGGG----------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126659 0.71 0.118706
Target:  5'- aGgGGCCC-CGCC-CCCggccgagcgCCGCCCCCg -3'
miRNA:   3'- gCgCCGGGcGCGGaGGGg--------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126564 0.67 0.230917
Target:  5'- gGCGgggccugauuuGCCUGUGCCcUCCCaCCGUCCCg -3'
miRNA:   3'- gCGC-----------CGGGCGCGG-AGGGgGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 126502 0.75 0.064113
Target:  5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3'
miRNA:   3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126451 0.67 0.241292
Target:  5'- aGUGcGCCC-C-CCUCCUCuaGCCCCCc -3'
miRNA:   3'- gCGC-CGGGcGcGGAGGGGggCGGGGG- -5'
6514 3' -71 NC_001847.1 + 126129 0.67 0.246624
Target:  5'- uGgGGuCCCGagugaGCUccgCCCaCCCaGCCCCCa -3'
miRNA:   3'- gCgCC-GGGCg----CGGa--GGG-GGG-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 125021 0.66 0.298437
Target:  5'- gGCcgGGCCCGCucGCCgcgaaggcggcuuUCCCCgCCGCUugugcuCCCg -3'
miRNA:   3'- gCG--CCGGGCG--CGG-------------AGGGG-GGCGG------GGG- -5'
6514 3' -71 NC_001847.1 + 124871 0.7 0.160867
Target:  5'- gCGCGGCCCGCGgUUUuuaugCgCCCGCUcauCCCa -3'
miRNA:   3'- -GCGCCGGGCGCgGAG-----GgGGGCGG---GGG- -5'
6514 3' -71 NC_001847.1 + 124795 0.71 0.127414
Target:  5'- gGCGGCCCccuCGCCgccguucuccUCCCCcuccucguCCGCCUCCu -3'
miRNA:   3'- gCGCCGGGc--GCGG----------AGGGG--------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 124546 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.