miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 120703 0.68 0.213192
Target:  5'- gCGCGGCCgCGCGCUcggcgCCaaacagcggagCCCCGCacagaggcucggucgCCCCu -3'
miRNA:   3'- -GCGCCGG-GCGCGGa----GG-----------GGGGCG---------------GGGG- -5'
6514 3' -71 NC_001847.1 + 120699 0.67 0.263205
Target:  5'- cCGCGG-CCGCGCa--CCCCgGCgCCg -3'
miRNA:   3'- -GCGCCgGGCGCGgagGGGGgCGgGGg -5'
6514 3' -71 NC_001847.1 + 120128 0.74 0.073472
Target:  5'- cCGCGGCUCGCGCggCCCCaCCGCggCCg -3'
miRNA:   3'- -GCGCCGGGCGCGgaGGGG-GGCGggGG- -5'
6514 3' -71 NC_001847.1 + 120058 0.68 0.197537
Target:  5'- gCGCGGcCCCGCuGCCgcaggcgaUCCCCggGCCgCCg -3'
miRNA:   3'- -GCGCC-GGGCG-CGG--------AGGGGggCGGgGG- -5'
6514 3' -71 NC_001847.1 + 120029 0.81 0.022489
Target:  5'- aGCGGCCUagGC-CCUCCCCcgaCCGCCCCCu -3'
miRNA:   3'- gCGCCGGG--CGcGGAGGGG---GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 119787 0.68 0.20848
Target:  5'- gGCuGGCCga-GCCUcgaagccaucacgcaCCCCCCGCCCgCCc -3'
miRNA:   3'- gCG-CCGGgcgCGGA---------------GGGGGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 119623 0.69 0.176342
Target:  5'- aGCaGCCCGCGgCUCCCgCCGagCCgCa -3'
miRNA:   3'- gCGcCGGGCGCgGAGGGgGGCg-GGgG- -5'
6514 3' -71 NC_001847.1 + 119572 0.72 0.102929
Target:  5'- cCGCcGCCUGcCGCCgauggggguUCCCCCgCGCCaCCCg -3'
miRNA:   3'- -GCGcCGGGC-GCGG---------AGGGGG-GCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 118504 0.66 0.292835
Target:  5'- gCGgGGCCCcgacggcaaaGcCGCCgCgCCCC-CCCCCa -3'
miRNA:   3'- -GCgCCGGG----------C-GCGGaGgGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 118071 0.66 0.26893
Target:  5'- aCGCGGCUgGCacgccgGCCguuuaCCgCCCGCCCg- -3'
miRNA:   3'- -GCGCCGGgCG------CGGa----GGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 117886 0.69 0.168445
Target:  5'- --gGGCCUGCGgCUgcUUCCCCGCCCUUg -3'
miRNA:   3'- gcgCCGGGCGCgGA--GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 117831 0.7 0.160867
Target:  5'- aCGCGGCcgugugCCGCGCCgccgaguacuaCCCgCCGCgCUCCa -3'
miRNA:   3'- -GCGCCG------GGCGCGGa----------GGGgGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 117330 0.67 0.236057
Target:  5'- aGCGGCgggggGCgGCCUcgCCCCCCGCggccgagcaaagCCCCg -3'
miRNA:   3'- gCGCCGgg---CG-CGGA--GGGGGGCG------------GGGG- -5'
6514 3' -71 NC_001847.1 + 117330 0.66 0.274755
Target:  5'- cCGCacuGGCaUgGCGcCCUCCCgCCCGCUggggCCCg -3'
miRNA:   3'- -GCG---CCG-GgCGC-GGAGGG-GGGCGG----GGG- -5'
6514 3' -71 NC_001847.1 + 117065 0.75 0.068306
Target:  5'- aGCcucGCCCuCGCCUCCgcccuCCCCGUCCCCa -3'
miRNA:   3'- gCGc--CGGGcGCGGAGG-----GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 115937 0.72 0.113211
Target:  5'- aGCGGCaCU-CGCCgUCUgggccacagaCCCCGCCCCCg -3'
miRNA:   3'- gCGCCG-GGcGCGG-AGG----------GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 115719 0.66 0.305397
Target:  5'- gCGCGGCCUuugGCGCUcCCgCUuuGCCUgCu -3'
miRNA:   3'- -GCGCCGGG---CGCGGaGG-GGggCGGGgG- -5'
6514 3' -71 NC_001847.1 + 115511 0.73 0.095801
Target:  5'- aGCGGCCgCGCGCCgaCgCCgGCgCCCCg -3'
miRNA:   3'- gCGCCGG-GCGCGGagGgGGgCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 115412 0.66 0.26893
Target:  5'- aGCGGCCCGcCGCgUCCggccaaCCUCGUCgCg -3'
miRNA:   3'- gCGCCGGGC-GCGgAGG------GGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 115336 0.68 0.206621
Target:  5'- uGCcGCCC-CGCCaCCgCCaCCGCCUCCg -3'
miRNA:   3'- gCGcCGGGcGCGGaGG-GG-GGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.