miRNA display CGI


Results 101 - 120 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 115240 0.67 0.263205
Target:  5'- gGCGacGCCCucguGCGCUUCUaCCUCGCgCCCg -3'
miRNA:   3'- gCGC--CGGG----CGCGGAGG-GGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 115063 0.69 0.193128
Target:  5'- gGcCGGgCCGCGCCgcgggagccgCCaCgCCGCUCCCg -3'
miRNA:   3'- gC-GCCgGGCGCGGa---------GG-GgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 113943 0.66 0.305397
Target:  5'- uCGCGG-CgGCGUCUCCUa-CGCCgCCg -3'
miRNA:   3'- -GCGCCgGgCGCGGAGGGggGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 113752 0.69 0.168445
Target:  5'- gGcCGGCCCGaauccCCUCCUCCC-CUCCCu -3'
miRNA:   3'- gC-GCCGGGCgc---GGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 113623 0.72 0.100259
Target:  5'- gCGCguuGGCCCGCGCggCCCCCgccgaggCGCgCCCg -3'
miRNA:   3'- -GCG---CCGGGCGCGgaGGGGG-------GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 113570 0.76 0.056185
Target:  5'- cCGCGGCCCccucucccGC-CCUCUCCCCGgCCCUu -3'
miRNA:   3'- -GCGCCGGG--------CGcGGAGGGGGGCgGGGG- -5'
6514 3' -71 NC_001847.1 + 113519 0.76 0.053497
Target:  5'- gCGCGGCCCGCGCCggCCaagCGCCgCCa -3'
miRNA:   3'- -GCGCCGGGCGCGGagGGgg-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 113422 0.76 0.053366
Target:  5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3'
miRNA:   3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 113379 0.72 0.100499
Target:  5'- gCGCcgGGCCCgGCGCCggcggcCCCCCCGCgCgCg -3'
miRNA:   3'- -GCG--CCGGG-CGCGGa-----GGGGGGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 113260 0.68 0.222891
Target:  5'- uCGCgGGCUCG-GCCUCggcagcgcgccgcagCCCCCGCaCCaCCu -3'
miRNA:   3'- -GCG-CCGGGCgCGGAG---------------GGGGGCG-GG-GG- -5'
6514 3' -71 NC_001847.1 + 113217 0.72 0.113211
Target:  5'- cCGCGGUCCuCuCCUCCgCCUCGCCCgCg -3'
miRNA:   3'- -GCGCCGGGcGcGGAGG-GGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 113168 0.7 0.153242
Target:  5'- gGCGGCgagggggCCGcCGCCgaaagCCCCCCccgguGCCgCCCg -3'
miRNA:   3'- gCGCCG-------GGC-GCGGa----GGGGGG-----CGG-GGG- -5'
6514 3' -71 NC_001847.1 + 113022 0.68 0.202035
Target:  5'- cCGCcgGGCCCagggcGCGCC-CgCUgUCGCCCCCg -3'
miRNA:   3'- -GCG--CCGGG-----CGCGGaG-GGgGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 112760 0.74 0.073472
Target:  5'- cCGCGGCCCggGCGCUUCUgCCCCgaggacuggcGCCCCg -3'
miRNA:   3'- -GCGCCGGG--CGCGGAGG-GGGG----------CGGGGg -5'
6514 3' -71 NC_001847.1 + 112706 0.7 0.164617
Target:  5'- cCGCucGCCCGaccgcgugGUCUCgggCCCCGCCCCCg -3'
miRNA:   3'- -GCGc-CGGGCg-------CGGAGg--GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 112650 0.67 0.241292
Target:  5'- aGCGcCCCGCcuuuCCUCCUCCUucucaCCCCCa -3'
miRNA:   3'- gCGCcGGGCGc---GGAGGGGGGc----GGGGG- -5'
6514 3' -71 NC_001847.1 + 112640 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 112576 0.71 0.133544
Target:  5'- cCGgGGCgcccgcuuaCCGCuCCUCCUcuucucuguCCCGCCCCCu -3'
miRNA:   3'- -GCgCCG---------GGCGcGGAGGG---------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 112506 0.69 0.168445
Target:  5'- gGCaaGCCCGC-CCUCCCCggaCGCgCCCu -3'
miRNA:   3'- gCGc-CGGGCGcGGAGGGGg--GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 112474 0.68 0.216063
Target:  5'- cCGCcuGCUCGCugcuauccagcuGCCUCCucuguuuggcaCCCCGCCUCCu -3'
miRNA:   3'- -GCGc-CGGGCG------------CGGAGG-----------GGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.