Results 121 - 140 of 685 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 112315 | 0.66 | 0.271248 |
Target: 5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3' miRNA: 3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 111350 | 0.66 | 0.280681 |
Target: 5'- gGUGGCcgCCGCGCUgggCgaCCUCGCgCCCg -3' miRNA: 3'- gCGCCG--GGCGCGGa--Gg-GGGGCGgGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 110793 | 0.69 | 0.184147 |
Target: 5'- gGCccuGCUCGgGCC-CCCCCuccacuuggacauCGCCCCCg -3' miRNA: 3'- gCGc--CGGGCgCGGaGGGGG-------------GCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 110298 | 0.69 | 0.173939 |
Target: 5'- gCGCGucGCCaccagaugGCGCCaUCCCCCUcccacucgggucguaGCCCCCc -3' miRNA: 3'- -GCGC--CGGg-------CGCGG-AGGGGGG---------------CGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109762 | 0.74 | 0.080946 |
Target: 5'- cCGCGGUCC-C-CCUCCgCCCGCCgCCg -3' miRNA: 3'- -GCGCCGGGcGcGGAGGgGGGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109402 | 0.7 | 0.164617 |
Target: 5'- cCGCGGCCC-UGCCUCCCUacuuUUGCCugugugaagggCCCa -3' miRNA: 3'- -GCGCCGGGcGCGGAGGGG----GGCGG-----------GGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109394 | 0.75 | 0.065058 |
Target: 5'- uGCGGUgCCGUGCCgccgCCgCCCGCCgCCg -3' miRNA: 3'- gCGCCG-GGCGCGGa---GGgGGGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109189 | 0.69 | 0.192256 |
Target: 5'- cCGCGGCCCccuuuggcccuagccGCuccauucucuccacgGCCaccaCCCCCCuCCCCCu -3' miRNA: 3'- -GCGCCGGG---------------CG---------------CGGa---GGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109148 | 0.76 | 0.054825 |
Target: 5'- uGCGcGCCUGCGCg-CCCgCCCGCCCgCCc -3' miRNA: 3'- gCGC-CGGGCGCGgaGGG-GGGCGGG-GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109037 | 0.79 | 0.031077 |
Target: 5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3' miRNA: 3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 108670 | 0.71 | 0.120402 |
Target: 5'- --aGGCCCGCcccuaccaguuccCCUCCCcauuCCCGCCCCUg -3' miRNA: 3'- gcgCCGGGCGc------------GGAGGG----GGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 108280 | 0.72 | 0.115654 |
Target: 5'- gGCGG-CCGCGUCUCUcuccuuuCCCCGCgCCUCu -3' miRNA: 3'- gCGCCgGGCGCGGAGG-------GGGGCG-GGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107900 | 0.7 | 0.164617 |
Target: 5'- gGCGGCagugCgGCGCCUUCUCCUuCCCCUu -3' miRNA: 3'- gCGCCG----GgCGCGGAGGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107846 | 0.66 | 0.26893 |
Target: 5'- cCGcCGGCaCCGC-CgUCCUCUCGCCCg- -3' miRNA: 3'- -GC-GCCG-GGCGcGgAGGGGGGCGGGgg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107743 | 0.66 | 0.274755 |
Target: 5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3' miRNA: 3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107595 | 0.74 | 0.076564 |
Target: 5'- uGCGGCucccagccgCCGCGCCgccguucucgggcgUCCCCgCCGCCgCCg -3' miRNA: 3'- gCGCCG---------GGCGCGG--------------AGGGG-GGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107491 | 0.7 | 0.139945 |
Target: 5'- aGCaGGgCCGgGUCUUCCUCCgaGCCCCCc -3' miRNA: 3'- gCG-CCgGGCgCGGAGGGGGG--CGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107445 | 0.67 | 0.246624 |
Target: 5'- gGCGGCCCgccggcgcucgcGCGCCUCagCCCgaCGCgCCg -3' miRNA: 3'- gCGCCGGG------------CGCGGAGg-GGG--GCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107420 | 0.73 | 0.087022 |
Target: 5'- cCGCGGCuuCCGcCGCUgacgCCCuuGCCCCCg -3' miRNA: 3'- -GCGCCG--GGC-GCGGag--GGGggCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 107386 | 0.72 | 0.107955 |
Target: 5'- uCGCuGCucuCCGCGUC-CUCCCCGCCCaCCa -3' miRNA: 3'- -GCGcCG---GGCGCGGaGGGGGGCGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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