miRNA display CGI


Results 141 - 160 of 685 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 107372 0.66 0.2861
Target:  5'- cCGCGcaguuuauuguacGCCC-CGCacagCCCCCCGCCgcaaCCg -3'
miRNA:   3'- -GCGC-------------CGGGcGCGga--GGGGGGCGGg---GG- -5'
6514 3' -71 NC_001847.1 + 107338 0.69 0.193128
Target:  5'- -uCGGCCUcgGCGCCcucgguggCCCCCgCGUCUCCg -3'
miRNA:   3'- gcGCCGGG--CGCGGa-------GGGGG-GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 107270 0.73 0.093531
Target:  5'- cCGCGacGUCCGCGuCCUcggcgCCCCCCGCgUCCCu -3'
miRNA:   3'- -GCGC--CGGGCGC-GGA-----GGGGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 107210 0.8 0.026114
Target:  5'- cCGCGGCCCaggcgcuguccGCGuCCUccgcgCCCUCCGCCCCCu -3'
miRNA:   3'- -GCGCCGGG-----------CGC-GGA-----GGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 107153 0.7 0.164617
Target:  5'- cCGCGGCC---GCCUCCgCCCCGgCCgCg -3'
miRNA:   3'- -GCGCCGGgcgCGGAGG-GGGGCgGGgG- -5'
6514 3' -71 NC_001847.1 + 107089 0.7 0.157194
Target:  5'- -uCGGCCUugagggGCGCCg-CCCCCGCCUCg -3'
miRNA:   3'- gcGCCGGG------CGCGGagGGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 107047 0.7 0.153597
Target:  5'- -cUGGCCCcgagggcacCGCCgCCCCCCGCCUCa -3'
miRNA:   3'- gcGCCGGGc--------GCGGaGGGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 106903 0.67 0.246624
Target:  5'- -uCGGCCUcaGCGUcggcgucggugCUCCCCUcccgggccuCGCCCCCa -3'
miRNA:   3'- gcGCCGGG--CGCG-----------GAGGGGG---------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 106810 0.76 0.056185
Target:  5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3'
miRNA:   3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 106741 0.66 0.280083
Target:  5'- uGCGcGCCCGCGCUggcgCCgCggcggggggggcgCCGUCUCCg -3'
miRNA:   3'- gCGC-CGGGCGCGGa---GGgG-------------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 106720 0.67 0.263205
Target:  5'- gGCGGCgUGCGCCagggcgCUaagCCCCGCCUg- -3'
miRNA:   3'- gCGCCGgGCGCGGa-----GG---GGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 106472 0.68 0.206621
Target:  5'- aGC-GCCgCGUacuGCUUCCCCgCGUCCCCc -3'
miRNA:   3'- gCGcCGG-GCG---CGGAGGGGgGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 106258 0.68 0.206158
Target:  5'- gGCGGCCgCGUGCucugcaaCUCgCCCCagCGCCgCCg -3'
miRNA:   3'- gCGCCGG-GCGCG-------GAG-GGGG--GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 105912 0.68 0.225872
Target:  5'- cCGCGGCCgGCagGCCgcggCCCgCCGCggCCg -3'
miRNA:   3'- -GCGCCGGgCG--CGGa---GGGgGGCGggGG- -5'
6514 3' -71 NC_001847.1 + 105831 0.68 0.225872
Target:  5'- uCGCGGCUCGCuuguccgcgGCCgcggCCUCUGCCgCCa -3'
miRNA:   3'- -GCGCCGGGCG---------CGGag--GGGGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 105738 0.7 0.157194
Target:  5'- -aCGGUCCGCGCCgCCagcgcggCCGCCUCCa -3'
miRNA:   3'- gcGCCGGGCGCGGaGGgg-----GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 105703 0.67 0.263205
Target:  5'- cCGCGGgCgGCGCCacgCCCCagCGCUCgCu -3'
miRNA:   3'- -GCGCCgGgCGCGGa--GGGGg-GCGGGgG- -5'
6514 3' -71 NC_001847.1 + 105641 0.66 0.303487
Target:  5'- uGCGGCCgaaGCGCCgCCCgCggccggagagcgugCCGCCUCg -3'
miRNA:   3'- gCGCCGGg--CGCGGaGGG-G--------------GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 105622 0.69 0.172354
Target:  5'- gCGCGGCcgccagCCGCGCCggcaCCUCCGCCg-- -3'
miRNA:   3'- -GCGCCG------GGCGCGGag--GGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 105575 0.73 0.095801
Target:  5'- gGCGGCgCCgGCGCCggcgCCCCCgccggcgGCCUCCa -3'
miRNA:   3'- gCGCCG-GG-CGCGGa---GGGGGg------CGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.