miRNA display CGI


Results 41 - 60 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 39495 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39468 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39441 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39414 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 39387 0.9 0.004634
Target:  5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5'
6514 3' -71 NC_001847.1 + 78310 0.8 0.028138
Target:  5'- gGCGGCugggCCGCccCCUCCCCgCGCCCCCa -3'
miRNA:   3'- gCGCCG----GGCGc-GGAGGGGgGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 61383 0.8 0.028774
Target:  5'- aGCGGCCCGCGCCgCCgCCCggcgcuuggaacuGCCCUCg -3'
miRNA:   3'- gCGCCGGGCGCGGaGGgGGG-------------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 113422 0.76 0.053366
Target:  5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3'
miRNA:   3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 88339 0.77 0.050189
Target:  5'- gCGCgGGCCUGUGCucgucugccguagccCUCCCCCCcCCCCCc -3'
miRNA:   3'- -GCG-CCGGGCGCG---------------GAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 130278 0.77 0.048491
Target:  5'- cCGCuGCCCGcCGCCcCCCCCCcUCCCCu -3'
miRNA:   3'- -GCGcCGGGC-GCGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 128287 0.77 0.048491
Target:  5'- gGCgGGCCaaagcaaGCGCCgCCCCCC-CCCCCa -3'
miRNA:   3'- gCG-CCGGg------CGCGGaGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 105247 0.77 0.047312
Target:  5'- cCGCGGCggccggcagggCCGcCGCCUCgccgUCCCCGUCCCCg -3'
miRNA:   3'- -GCGCCG-----------GGC-GCGGAG----GGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 61951 0.78 0.041723
Target:  5'- gCGCGGCCCGCGCgggccgaCUCCgCCgCCGCgUCCg -3'
miRNA:   3'- -GCGCCGGGCGCG-------GAGG-GG-GGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 131159 0.78 0.039811
Target:  5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3'
miRNA:   3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 917 0.79 0.033478
Target:  5'- gGCGGaCCCG-GCCUUCCCaCCGCCgCCCu -3'
miRNA:   3'- gCGCC-GGGCgCGGAGGGG-GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 10424 0.79 0.032658
Target:  5'- gCGCGGUUCGCGCUgccgCCCCCGCgCCCg -3'
miRNA:   3'- -GCGCCGGGCGCGGag--GGGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 103697 0.79 0.031858
Target:  5'- gGCGGCCCGCGCCggggCCgCCgcggccgccggCCGCCgCCCg -3'
miRNA:   3'- gCGCCGGGCGCGGa---GG-GG-----------GGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 109037 0.79 0.031077
Target:  5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3'
miRNA:   3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 103313 0.79 0.030315
Target:  5'- gGCGGCCgCGCGCCaacCCCCCUGUCCgCg -3'
miRNA:   3'- gCGCCGG-GCGCGGa--GGGGGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 39361 0.8 0.028846
Target:  5'- uGC-GCCCGCGCCgCCCCCCGCgCCa -3'
miRNA:   3'- gCGcCGGGCGCGGaGGGGGGCGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.