Results 41 - 60 of 685 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 39495 | 0.9 | 0.004634 |
Target: 5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39468 | 0.9 | 0.004634 |
Target: 5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39441 | 0.9 | 0.004634 |
Target: 5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39414 | 0.9 | 0.004634 |
Target: 5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39387 | 0.9 | 0.004634 |
Target: 5'- aGCGGCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGCCGGGCGCGGaGGGGGGCGgGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 78310 | 0.8 | 0.028138 |
Target: 5'- gGCGGCugggCCGCccCCUCCCCgCGCCCCCa -3' miRNA: 3'- gCGCCG----GGCGc-GGAGGGGgGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 61383 | 0.8 | 0.028774 |
Target: 5'- aGCGGCCCGCGCCgCCgCCCggcgcuuggaacuGCCCUCg -3' miRNA: 3'- gCGCCGGGCGCGGaGGgGGG-------------CGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 113422 | 0.76 | 0.053366 |
Target: 5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3' miRNA: 3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 88339 | 0.77 | 0.050189 |
Target: 5'- gCGCgGGCCUGUGCucgucugccguagccCUCCCCCCcCCCCCc -3' miRNA: 3'- -GCG-CCGGGCGCG---------------GAGGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 130278 | 0.77 | 0.048491 |
Target: 5'- cCGCuGCCCGcCGCCcCCCCCCcUCCCCu -3' miRNA: 3'- -GCGcCGGGC-GCGGaGGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 128287 | 0.77 | 0.048491 |
Target: 5'- gGCgGGCCaaagcaaGCGCCgCCCCCC-CCCCCa -3' miRNA: 3'- gCG-CCGGg------CGCGGaGGGGGGcGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 105247 | 0.77 | 0.047312 |
Target: 5'- cCGCGGCggccggcagggCCGcCGCCUCgccgUCCCCGUCCCCg -3' miRNA: 3'- -GCGCCG-----------GGC-GCGGAG----GGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 61951 | 0.78 | 0.041723 |
Target: 5'- gCGCGGCCCGCGCgggccgaCUCCgCCgCCGCgUCCg -3' miRNA: 3'- -GCGCCGGGCGCG-------GAGG-GG-GGCGgGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 131159 | 0.78 | 0.039811 |
Target: 5'- gCGgGGCCgCGCGCCcgggCCCCCggCGCCCUCg -3' miRNA: 3'- -GCgCCGG-GCGCGGa---GGGGG--GCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 917 | 0.79 | 0.033478 |
Target: 5'- gGCGGaCCCG-GCCUUCCCaCCGCCgCCCu -3' miRNA: 3'- gCGCC-GGGCgCGGAGGGG-GGCGG-GGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 10424 | 0.79 | 0.032658 |
Target: 5'- gCGCGGUUCGCGCUgccgCCCCCGCgCCCg -3' miRNA: 3'- -GCGCCGGGCGCGGag--GGGGGCGgGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 103697 | 0.79 | 0.031858 |
Target: 5'- gGCGGCCCGCGCCggggCCgCCgcggccgccggCCGCCgCCCg -3' miRNA: 3'- gCGCCGGGCGCGGa---GG-GG-----------GGCGG-GGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109037 | 0.79 | 0.031077 |
Target: 5'- cCGCuuccuGCCCaGCGCCacugcUCCCUCCGCCCCCa -3' miRNA: 3'- -GCGc----CGGG-CGCGG-----AGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 103313 | 0.79 | 0.030315 |
Target: 5'- gGCGGCCgCGCGCCaacCCCCCUGUCCgCg -3' miRNA: 3'- gCGCCGG-GCGCGGa--GGGGGGCGGGgG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39361 | 0.8 | 0.028846 |
Target: 5'- uGC-GCCCGCGCCgCCCCCCGCgCCa -3' miRNA: 3'- gCGcCGGGCGCGGaGGGGGGCGgGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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