Results 81 - 100 of 685 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 16027 | 0.75 | 0.063491 |
Target: 5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3' miRNA: 3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 80593 | 0.75 | 0.063491 |
Target: 5'- gGCGcGaCUGCGUCUUccccgCCCCCGCCCCCg -3' miRNA: 3'- gCGC-CgGGCGCGGAG-----GGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 126502 | 0.75 | 0.064113 |
Target: 5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3' miRNA: 3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 102769 | 0.75 | 0.066501 |
Target: 5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3' miRNA: 3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 38329 | 0.75 | 0.066663 |
Target: 5'- gCGCGGUcgCCGcCGCUgcgcgCCCCCCGaCCCCa -3' miRNA: 3'- -GCGCCG--GGC-GCGGa----GGGGGGCgGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 55580 | 0.75 | 0.066663 |
Target: 5'- cCGCGaGCCCgGCGCCcCCcgcgagCCCCaGCCCCCc -3' miRNA: 3'- -GCGC-CGGG-CGCGGaGG------GGGG-CGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 53868 | 0.75 | 0.067316 |
Target: 5'- gGCGGCgCCGacCGCCgcgggggcggcgggCCCCCCGUCCUCg -3' miRNA: 3'- gCGCCG-GGC--GCGGa-------------GGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 102928 | 0.75 | 0.060464 |
Target: 5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3' miRNA: 3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 986 | 0.75 | 0.060464 |
Target: 5'- gCGcCGGCCCGCaGCa-CCUUCUGCCCCCa -3' miRNA: 3'- -GC-GCCGGGCG-CGgaGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 102163 | 0.75 | 0.060317 |
Target: 5'- cCGCccuGCCCGCcccggcgccucugGCCUCCCCggccuccuCCGCCCCCc -3' miRNA: 3'- -GCGc--CGGGCG-------------CGGAGGGG--------GGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 88339 | 0.77 | 0.050189 |
Target: 5'- gCGCgGGCCUGUGCucgucugccguagccCUCCCCCCcCCCCCc -3' miRNA: 3'- -GCG-CCGGGCGCG---------------GAGGGGGGcGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 113422 | 0.76 | 0.053366 |
Target: 5'- gCGcCGGCCCGCGCCcugcuggcgcuggUCCUCCgGCUCCUc -3' miRNA: 3'- -GC-GCCGGGCGCGG-------------AGGGGGgCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 113519 | 0.76 | 0.053497 |
Target: 5'- gCGCGGCCCGCGCCggCCaagCGCCgCCa -3' miRNA: 3'- -GCGCCGGGCGCGGagGGgg-GCGGgGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 26498 | 0.76 | 0.054423 |
Target: 5'- cCGCGGCCCcggccacuucugcaGCGUCgCCCgCCGUCCCCc -3' miRNA: 3'- -GCGCCGGG--------------CGCGGaGGGgGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 109148 | 0.76 | 0.054825 |
Target: 5'- uGCGcGCCUGCGCg-CCCgCCCGCCCgCCc -3' miRNA: 3'- gCGC-CGGGCGCGgaGGG-GGGCGGG-GG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 48762 | 0.76 | 0.054825 |
Target: 5'- cCGCGcGCCCGcCGCCgcggCCCgCCGCCUCg -3' miRNA: 3'- -GCGC-CGGGC-GCGGa---GGGgGGCGGGGg -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 106810 | 0.76 | 0.056185 |
Target: 5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3' miRNA: 3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 113570 | 0.76 | 0.056185 |
Target: 5'- cCGCGGCCCccucucccGC-CCUCUCCCCGgCCCUu -3' miRNA: 3'- -GCGCCGGG--------CGcGGAGGGGGGCgGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 88598 | 0.75 | 0.060317 |
Target: 5'- gCGCGGCUggaggaccucgcgCGCGCCg-CCgCCGCCCCCc -3' miRNA: 3'- -GCGCCGG-------------GCGCGGagGGgGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 96710 | 0.75 | 0.068306 |
Target: 5'- uGCGauGCCCGCcCCUCgggCUCCCGCCCCUg -3' miRNA: 3'- gCGC--CGGGCGcGGAG---GGGGGCGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home