Results 101 - 120 of 685 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 112760 | 0.74 | 0.073472 |
Target: 5'- cCGCGGCCCggGCGCUUCUgCCCCgaggacuggcGCCCCg -3' miRNA: 3'- -GCGCCGGG--CGCGGAGG-GGGG----------CGGGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 133046 | 0.74 | 0.077122 |
Target: 5'- uCGCGGCCCGcCGCCgcgcgggCCCCgcggggcgcUCGCCgCCa -3' miRNA: 3'- -GCGCCGGGC-GCGGa------GGGG---------GGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 39862 | 0.74 | 0.079012 |
Target: 5'- aGCGGCCgcaaGCuuGCCggcgCCCCCgaucgCGCCCCCg -3' miRNA: 3'- gCGCCGGg---CG--CGGa---GGGGG-----GCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 38718 | 0.74 | 0.080946 |
Target: 5'- cCGgGG-CCGCGCCUgCCgCCGgCCCCg -3' miRNA: 3'- -GCgCCgGGCGCGGAgGGgGGCgGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109762 | 0.74 | 0.080946 |
Target: 5'- cCGCGGUCC-C-CCUCCgCCCGCCgCCg -3' miRNA: 3'- -GCGCCGGGcGcGGAGGgGGGCGGgGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 102769 | 0.75 | 0.066501 |
Target: 5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3' miRNA: 3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 126502 | 0.75 | 0.064113 |
Target: 5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3' miRNA: 3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 109148 | 0.76 | 0.054825 |
Target: 5'- uGCGcGCCUGCGCg-CCCgCCCGCCCgCCc -3' miRNA: 3'- gCGC-CGGGCGCGgaGGG-GGGCGGG-GG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 48762 | 0.76 | 0.054825 |
Target: 5'- cCGCGcGCCCGcCGCCgcggCCCgCCGCCUCg -3' miRNA: 3'- -GCGC-CGGGC-GCGGa---GGGgGGCGGGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 106810 | 0.76 | 0.056185 |
Target: 5'- gCGCGGCCCcgcgggGCGCCgggCCCggcgCCCGCCUCUc -3' miRNA: 3'- -GCGCCGGG------CGCGGa--GGG----GGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 113570 | 0.76 | 0.056185 |
Target: 5'- cCGCGGCCCccucucccGC-CCUCUCCCCGgCCCUu -3' miRNA: 3'- -GCGCCGGG--------CGcGGAGGGGGGCgGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 88598 | 0.75 | 0.060317 |
Target: 5'- gCGCGGCUggaggaccucgcgCGCGCCg-CCgCCGCCCCCc -3' miRNA: 3'- -GCGCCGG-------------GCGCGGagGGgGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 102163 | 0.75 | 0.060317 |
Target: 5'- cCGCccuGCCCGCcccggcgccucugGCCUCCCCggccuccuCCGCCCCCc -3' miRNA: 3'- -GCGc--CGGGCG-------------CGGAGGGG--------GGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 986 | 0.75 | 0.060464 |
Target: 5'- gCGcCGGCCCGCaGCa-CCUUCUGCCCCCa -3' miRNA: 3'- -GC-GCCGGGCG-CGgaGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 102928 | 0.75 | 0.060464 |
Target: 5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3' miRNA: 3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 101251 | 0.75 | 0.06196 |
Target: 5'- aGCcuGGCCCG-GCgCUCCCCUCGUCCCUc -3' miRNA: 3'- gCG--CCGGGCgCG-GAGGGGGGCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 88216 | 0.75 | 0.06196 |
Target: 5'- aCGCGGCCCGgaGCCcgggCCCgaCgCGCCCCCc -3' miRNA: 3'- -GCGCCGGGCg-CGGa---GGGg-G-GCGGGGG- -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 15908 | 0.75 | 0.063491 |
Target: 5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3' miRNA: 3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 16027 | 0.75 | 0.063491 |
Target: 5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3' miRNA: 3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' |
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6514 | 3' | -71 | NC_001847.1 | + | 80593 | 0.75 | 0.063491 |
Target: 5'- gGCGcGaCUGCGUCUUccccgCCCCCGCCCCCg -3' miRNA: 3'- gCGC-CgGGCGCGGAG-----GGGGGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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