Results 121 - 140 of 685 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 3' | -71 | NC_001847.1 | + | 107270 | 0.73 | 0.093531 |
Target: 5'- cCGCGacGUCCGCGuCCUcggcgCCCCCCGCgUCCCu -3' miRNA: 3'- -GCGC--CGGGCGC-GGA-----GGGGGGCG-GGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 85539 | 0.73 | 0.095801 |
Target: 5'- gGUGGCgCGCGCCgagcUCCCgCUGCgCCCa -3' miRNA: 3'- gCGCCGgGCGCGG----AGGGgGGCGgGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 18992 | 0.74 | 0.07171 |
Target: 5'- cCGCGGCCgccaGCGCCUCgggCCgCGCgCCCCa -3' miRNA: 3'- -GCGCCGGg---CGCGGAGg--GGgGCG-GGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 127707 | 0.74 | 0.07171 |
Target: 5'- uGCGGgCCGCugcaaguacGCCcCCCCCCcCCCCCc -3' miRNA: 3'- gCGCCgGGCG---------CGGaGGGGGGcGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 46787 | 0.75 | 0.069988 |
Target: 5'- cCGC-GCCCGCGCg-CCCCUCGUUCCCc -3' miRNA: 3'- -GCGcCGGGCGCGgaGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 986 | 0.75 | 0.060464 |
Target: 5'- gCGcCGGCCCGCaGCa-CCUUCUGCCCCCa -3' miRNA: 3'- -GC-GCCGGGCG-CGgaGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 102928 | 0.75 | 0.060464 |
Target: 5'- gGCGcCCCGCGCC-CCggCCCCGCCCgCg -3' miRNA: 3'- gCGCcGGGCGCGGaGG--GGGGCGGGgG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 101251 | 0.75 | 0.06196 |
Target: 5'- aGCcuGGCCCG-GCgCUCCCCUCGUCCCUc -3' miRNA: 3'- gCG--CCGGGCgCG-GAGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 88216 | 0.75 | 0.06196 |
Target: 5'- aCGCGGCCCGgaGCCcgggCCCgaCgCGCCCCCc -3' miRNA: 3'- -GCGCCGGGCg-CGGa---GGGg-G-GCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 15908 | 0.75 | 0.063491 |
Target: 5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3' miRNA: 3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 16027 | 0.75 | 0.063491 |
Target: 5'- uCGaCGGCCCcaUGCCUgCCCCgCCGCCCCg -3' miRNA: 3'- -GC-GCCGGGc-GCGGA-GGGG-GGCGGGGg -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 80593 | 0.75 | 0.063491 |
Target: 5'- gGCGcGaCUGCGUCUUccccgCCCCCGCCCCCg -3' miRNA: 3'- gCGC-CgGGCGCGGAG-----GGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 105575 | 0.73 | 0.095801 |
Target: 5'- gGCGGCgCCgGCGCCggcgCCCCCgccggcgGCCUCCa -3' miRNA: 3'- gCGCCG-GG-CGCGGa---GGGGGg------CGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 126502 | 0.75 | 0.064113 |
Target: 5'- gCGCGcuuauaugucuuugaGUagggCGCuCCUCCCCCCGCCCCCg -3' miRNA: 3'- -GCGC---------------CGg---GCGcGGAGGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 102769 | 0.75 | 0.066501 |
Target: 5'- gCGCGacGCCCGCgacGCCggcgCCCCCCgcgcgggggcuggGCCCCCu -3' miRNA: 3'- -GCGC--CGGGCG---CGGa---GGGGGG-------------CGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 38329 | 0.75 | 0.066663 |
Target: 5'- gCGCGGUcgCCGcCGCUgcgcgCCCCCCGaCCCCa -3' miRNA: 3'- -GCGCCG--GGC-GCGGa----GGGGGGCgGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 55580 | 0.75 | 0.066663 |
Target: 5'- cCGCGaGCCCgGCGCCcCCcgcgagCCCCaGCCCCCc -3' miRNA: 3'- -GCGC-CGGG-CGCGGaGG------GGGG-CGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 53868 | 0.75 | 0.067316 |
Target: 5'- gGCGGCgCCGacCGCCgcgggggcggcgggCCCCCCGUCCUCg -3' miRNA: 3'- gCGCCG-GGC--GCGGa-------------GGGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 96710 | 0.75 | 0.068306 |
Target: 5'- uGCGauGCCCGCcCCUCgggCUCCCGCCCCUg -3' miRNA: 3'- gCGC--CGGGCGcGGAG---GGGGGCGGGGG- -5' |
|||||||
6514 | 3' | -71 | NC_001847.1 | + | 40280 | 0.75 | 0.069988 |
Target: 5'- aGCuGCCCGCGCC-CCCCaagGUCCCCc -3' miRNA: 3'- gCGcCGGGCGCGGaGGGGgg-CGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home