miRNA display CGI


Results 61 - 80 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 59495 0.66 0.280681
Target:  5'- aGCaacGCCCGCGCCUCCggCUCCGgCaucgCCg -3'
miRNA:   3'- gCGc--CGGGCGCGGAGG--GGGGCgGg---GG- -5'
6514 3' -71 NC_001847.1 + 32156 0.66 0.279487
Target:  5'- gGgGGCCCcggGgGCCaagacgcagaaCCCCgGCCCCCc -3'
miRNA:   3'- gCgCCGGG---CgCGGag---------GGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 113943 0.66 0.305397
Target:  5'- uCGCGG-CgGCGUCUCCUa-CGCCgCCg -3'
miRNA:   3'- -GCGCCgGgCGCGGAGGGggGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 99096 0.66 0.303487
Target:  5'- aCGCGGCCgGCaGCCgcgcguagugcucgUCCgCgCGCagCCCCa -3'
miRNA:   3'- -GCGCCGGgCG-CGG--------------AGGgGgGCG--GGGG- -5'
6514 3' -71 NC_001847.1 + 76910 0.66 0.299065
Target:  5'- gGcCGaGCUCGCGCgCaCgUCCCGCCUCCa -3'
miRNA:   3'- gC-GC-CGGGCGCG-GaGgGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 98299 0.66 0.292835
Target:  5'- cCGCcGCCgaGCGCacgUCCgCCaGCCCCCa -3'
miRNA:   3'- -GCGcCGGg-CGCGg--AGGgGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 93933 0.66 0.292835
Target:  5'- uGCGGCauucucgcgauaCUGCGCCUUUUCUgggCGCCCUCu -3'
miRNA:   3'- gCGCCG------------GGCGCGGAGGGGG---GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 60023 0.66 0.287315
Target:  5'- gCGgGGCCCGgGCCUUCUCgggcaagcgccggggCGCCgCCg -3'
miRNA:   3'- -GCgCCGGGCgCGGAGGGGg--------------GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 32106 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 65665 0.66 0.280681
Target:  5'- cCGCcaGCCCG-GCCagcaggagCCCCgCCGCCgCCg -3'
miRNA:   3'- -GCGc-CGGGCgCGGa-------GGGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 130696 0.67 0.246624
Target:  5'- gCGCGGCCuuucacggcgugCGCGUUUCCCUgcggcgcgcgCUGCCgCCg -3'
miRNA:   3'- -GCGCCGG------------GCGCGGAGGGG----------GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 124365 0.67 0.252053
Target:  5'- --aGGCCCGCGUaccgCUCUUCCCGCgCgCg -3'
miRNA:   3'- gcgCCGGGCGCG----GAGGGGGGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 4930 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 9827 0.66 0.271248
Target:  5'- -cCGGCCCGcCGCCgCCaugagccacggccagCCuuGCCCCa -3'
miRNA:   3'- gcGCCGGGC-GCGGaGG---------------GGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 104395 0.66 0.26893
Target:  5'- aGCGGgCCGCgGUCUaCgCCCGCCCa- -3'
miRNA:   3'- gCGCCgGGCG-CGGAgGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 132568 0.67 0.263205
Target:  5'- cCGCGGCggCCGCGCaggCgCCCgCGCCgaagacagCCCg -3'
miRNA:   3'- -GCGCCG--GGCGCGga-G-GGGgGCGG--------GGG- -5'
6514 3' -71 NC_001847.1 + 2692 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 105703 0.67 0.263205
Target:  5'- cCGCGGgCgGCGCCacgCCCCagCGCUCgCu -3'
miRNA:   3'- -GCGCCgGgCGCGGa--GGGGg-GCGGGgG- -5'
6514 3' -71 NC_001847.1 + 30064 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 56844 0.67 0.257579
Target:  5'- gGCGGCCCa-GCCgCCCgagcaCCGCCUCg -3'
miRNA:   3'- gCGCCGGGcgCGGaGGGg----GGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.