miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 59348 0.66 0.274168
Target:  5'- gGCGGCgaggucgcgcgCCGCGCCgagCCCgCgGCCguguucaCCCg -3'
miRNA:   3'- gCGCCG-----------GGCGCGGa--GGGgGgCGG-------GGG- -5'
6514 3' -71 NC_001847.1 + 118071 0.66 0.26893
Target:  5'- aCGCGGCUgGCacgccgGCCguuuaCCgCCCGCCCg- -3'
miRNA:   3'- -GCGCCGGgCG------CGGa----GGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 69870 0.66 0.267202
Target:  5'- aCGUaGGCCCGCcgcugcggaccgGCCgcgggCCCggguggcggaaaagCgCCGCCCCCg -3'
miRNA:   3'- -GCG-CCGGGCG------------CGGa----GGG--------------G-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 82639 0.67 0.263205
Target:  5'- gCGCGG-CCGCGCgCUCCgUCaGCUCCa -3'
miRNA:   3'- -GCGCCgGGCGCG-GAGGgGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 115240 0.67 0.263205
Target:  5'- gGCGacGCCCucguGCGCUUCUaCCUCGCgCCCg -3'
miRNA:   3'- gCGC--CGGG----CGCGGAGG-GGGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 30064 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 56844 0.67 0.257579
Target:  5'- gGCGGCCCa-GCCgCCCgagcaCCGCCUCg -3'
miRNA:   3'- gCGCCGGGcgCGGaGGGg----GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 65665 0.66 0.280681
Target:  5'- cCGCcaGCCCG-GCCagcaggagCCCCgCCGCCgCCg -3'
miRNA:   3'- -GCGc-CGGGCgCGGa-------GGGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 32106 0.66 0.286707
Target:  5'- gCGCgaGGCCCGgGCUcgggCCCCCgGgCgCCg -3'
miRNA:   3'- -GCG--CCGGGCgCGGa---GGGGGgCgGgGG- -5'
6514 3' -71 NC_001847.1 + 60023 0.66 0.287315
Target:  5'- gCGgGGCCCGgGCCUUCUCgggcaagcgccggggCGCCgCCg -3'
miRNA:   3'- -GCgCCGGGCgCGGAGGGGg--------------GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 81285 0.67 0.246624
Target:  5'- gGCGGUCgGCGCCgccagcgCCgCCagCGCCgCCg -3'
miRNA:   3'- gCGCCGGgCGCGGa------GG-GGg-GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 4632 0.67 0.246624
Target:  5'- gGCGGCCCgccggcgcucgcGCGCCUCagCCCgaCGCgCCg -3'
miRNA:   3'- gCGCCGGG------------CGCGGAGg-GGG--GCGgGGg -5'
6514 3' -71 NC_001847.1 + 103162 0.67 0.241292
Target:  5'- uCGCGGCUCGagggcgGCgUCCacggggCCCGCCgCCg -3'
miRNA:   3'- -GCGCCGGGCg-----CGgAGGg-----GGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 30029 0.67 0.241292
Target:  5'- uGgGGCCCaUGCCgCCCggcggcCCCGCCgCCg -3'
miRNA:   3'- gCgCCGGGcGCGGaGGG------GGGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 47456 0.67 0.236057
Target:  5'- cCGCGGCgCCGCaGCagCCCCagCGCCCgggCCa -3'
miRNA:   3'- -GCGCCG-GGCG-CGgaGGGGg-GCGGG---GG- -5'
6514 3' -71 NC_001847.1 + 113943 0.66 0.305397
Target:  5'- uCGCGG-CgGCGUCUCCUa-CGCCgCCg -3'
miRNA:   3'- -GCGCCgGgCGCGGAGGGggGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 99096 0.66 0.303487
Target:  5'- aCGCGGCCgGCaGCCgcgcguagugcucgUCCgCgCGCagCCCCa -3'
miRNA:   3'- -GCGCCGGgCG-CGG--------------AGGgGgGCG--GGGG- -5'
6514 3' -71 NC_001847.1 + 76910 0.66 0.299065
Target:  5'- gGcCGaGCUCGCGCgCaCgUCCCGCCUCCa -3'
miRNA:   3'- gC-GC-CGGGCGCG-GaGgGGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 98299 0.66 0.292835
Target:  5'- cCGCcGCCgaGCGCacgUCCgCCaGCCCCCa -3'
miRNA:   3'- -GCGcCGGg-CGCGg--AGGgGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 93933 0.66 0.292835
Target:  5'- uGCGGCauucucgcgauaCUGCGCCUUUUCUgggCGCCCUCu -3'
miRNA:   3'- gCGCCG------------GGCGCGGAGGGGG---GCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.