miRNA display CGI


Results 121 - 140 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 90032 0.66 0.292835
Target:  5'- uCGCGcUCUGuUGUCUgCCCCCaCCCCCg -3'
miRNA:   3'- -GCGCcGGGC-GCGGAgGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 123963 0.66 0.286707
Target:  5'- gCGCGGaCCaGCGgCagCCCCaGCUCCCg -3'
miRNA:   3'- -GCGCC-GGgCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 117330 0.67 0.236057
Target:  5'- aGCGGCgggggGCgGCCUcgCCCCCCGCggccgagcaaagCCCCg -3'
miRNA:   3'- gCGCCGgg---CG-CGGA--GGGGGGCG------------GGGG- -5'
6514 3' -71 NC_001847.1 + 86932 0.67 0.236057
Target:  5'- gGCGGCgCUGCGCucCUCggCCCUgGCCgCCg -3'
miRNA:   3'- gCGCCG-GGCGCG--GAG--GGGGgCGGgGG- -5'
6514 3' -71 NC_001847.1 + 69712 0.67 0.239711
Target:  5'- cCGCGGCgCGCgGCUgccgCCUCCCggagcaucaaaaaaGCCuCCCg -3'
miRNA:   3'- -GCGCCGgGCG-CGGa---GGGGGG--------------CGG-GGG- -5'
6514 3' -71 NC_001847.1 + 38795 0.66 0.280681
Target:  5'- uGcCGGCagCGCGUCgcacgccagCCCgCCGCCCaCCg -3'
miRNA:   3'- gC-GCCGg-GCGCGGa--------GGGgGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 93475 0.66 0.278892
Target:  5'- gGCGuGUCCGUGCUcuuccagggguacuUCUCgCgGCCCCCc -3'
miRNA:   3'- gCGC-CGGGCGCGG--------------AGGGgGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 4930 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 77464 0.66 0.26893
Target:  5'- cCGCGGCgcccagcaccaCCGUGCCcaCCgCCUGCCCg- -3'
miRNA:   3'- -GCGCCG-----------GGCGCGGa-GGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 104395 0.66 0.26893
Target:  5'- aGCGGgCCGCgGUCUaCgCCCGCCCa- -3'
miRNA:   3'- gCGCCgGGCG-CGGAgGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 99215 0.67 0.263205
Target:  5'- gCGCGGCggCGCGCCgccacaaagagcUCCCacgcgCCGUCCCa -3'
miRNA:   3'- -GCGCCGg-GCGCGG------------AGGGg----GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 2692 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 79016 0.67 0.263205
Target:  5'- cCGcCGaGCCCaGCGCCguguacacaucgUCCgucgugugccagCCCCGCaCCCCg -3'
miRNA:   3'- -GC-GC-CGGG-CGCGG------------AGG------------GGGGCG-GGGG- -5'
6514 3' -71 NC_001847.1 + 30064 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 31578 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 124365 0.67 0.252053
Target:  5'- --aGGCCCGCGUaccgCUCUUCCCGCgCgCg -3'
miRNA:   3'- gcgCCGGGCGCG----GAGGGGGGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 4090 0.67 0.246624
Target:  5'- -uCGGCCUcaGCGUcggcgucggugCUCCCCUcccgggccuCGCCCCCa -3'
miRNA:   3'- gcGCCGGG--CGCG-----------GAGGGGG---------GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 31326 0.67 0.246624
Target:  5'- gGCGGCCugguggagcgCGUGCCgccgCCggcggcggaagCCCCGCCggCCCg -3'
miRNA:   3'- gCGCCGG----------GCGCGGa---GG-----------GGGGCGG--GGG- -5'
6514 3' -71 NC_001847.1 + 64343 0.67 0.246086
Target:  5'- gCGUGGCCugguacaCGCGCUUCUCUaggGCCUCCa -3'
miRNA:   3'- -GCGCCGG-------GCGCGGAGGGGgg-CGGGGG- -5'
6514 3' -71 NC_001847.1 + 46282 0.67 0.241292
Target:  5'- cCGCGcGCaCCGCGUCUUCCUCUacgGCCagCCg -3'
miRNA:   3'- -GCGC-CG-GGCGCGGAGGGGGG---CGGg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.