Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6514 | 5' | -50 | NC_001847.1 | + | 76695 | 0.67 | 0.983914 |
Target: 5'- uGCuuuGUGGcgcGGGAGGAGgCGCGC-CGGGa -3' miRNA: 3'- -UGu--UACU---UCUUUCUCgGCGUGaGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 85514 | 0.67 | 0.990396 |
Target: 5'- cGCGAgGAAGAccAGGGCCGU-UUCGGGa -3' miRNA: 3'- -UGUUaCUUCUu-UCUCGGCGuGAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 93471 | 0.67 | 0.990396 |
Target: 5'- aGCAGgaucuccuUGAAGAGccgcGuGCCGCGCgUCGGGu -3' miRNA: 3'- -UGUU--------ACUUCUUu---CuCGGCGUG-AGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 94666 | 0.67 | 0.987476 |
Target: 5'- --cGUGAcGGAAGAGCaccuCGCGCUCGuGGa -3' miRNA: 3'- uguUACUuCUUUCUCG----GCGUGAGC-CU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 115057 | 0.67 | 0.98578 |
Target: 5'- aGCGAUGGcc---GGGCCGCGCcgCGGGa -3' miRNA: 3'- -UGUUACUucuuuCUCGGCGUGa-GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 59550 | 0.68 | 0.9717 |
Target: 5'- gGCGGUGggGGcggcGGGGGCgGUGCcggCGGAa -3' miRNA: 3'- -UGUUACuuCU----UUCUCGgCGUGa--GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 83393 | 0.68 | 0.979633 |
Target: 5'- uCGAUGuccuccuuGGAGAGcAGCCGCGC-CGGc -3' miRNA: 3'- uGUUACu-------UCUUUC-UCGGCGUGaGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 11222 | 0.68 | 0.979633 |
Target: 5'- -aAGUGggGccucuggugGAGGAGCCGCcguuUUCGGGa -3' miRNA: 3'- ugUUACuuC---------UUUCUCGGCGu---GAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 65426 | 0.68 | 0.979633 |
Target: 5'- uGCuccgGGAGgcGGcAGCCGCGCgccgCGGAc -3' miRNA: 3'- -UGuua-CUUCuuUC-UCGGCGUGa---GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 2492 | 0.68 | 0.981868 |
Target: 5'- cGCcguGUGAAGAcgucgcGAGGGCCGC-CUCGc- -3' miRNA: 3'- -UGu--UACUUCU------UUCUCGGCGuGAGCcu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 65091 | 0.68 | 0.979633 |
Target: 5'- gGCAGUGcuaagcugcGAgcGAGCCGCgGCUCGGc -3' miRNA: 3'- -UGUUACuu-------CUuuCUCGGCG-UGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 67002 | 0.69 | 0.953913 |
Target: 5'- gGCGccGGAGAAGGGGCagacgCGCGCUCGc- -3' miRNA: 3'- -UGUuaCUUCUUUCUCG-----GCGUGAGCcu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 31707 | 0.69 | 0.953913 |
Target: 5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3' miRNA: 3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 96197 | 0.69 | 0.953495 |
Target: 5'- gGCAAUGGcggggccGGAGucGGGGCCGgAgUCGGGg -3' miRNA: 3'- -UGUUACU-------UCUU--UCUCGGCgUgAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 122399 | 0.69 | 0.953913 |
Target: 5'- cGCGAaGAAGGcgcuGGGCCGCACcCGGc -3' miRNA: 3'- -UGUUaCUUCUuu--CUCGGCGUGaGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 134520 | 0.69 | 0.953913 |
Target: 5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3' miRNA: 3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 90331 | 0.69 | 0.965306 |
Target: 5'- cCGAcUGggGcgcGGuGCCGCGCUCGGc -3' miRNA: 3'- uGUU-ACuuCuu-UCuCGGCGUGAGCCu -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 115914 | 0.7 | 0.945053 |
Target: 5'- gACGGgaucGAAGggGGGGCUGCcgUCGGGa -3' miRNA: 3'- -UGUUa---CUUCuuUCUCGGCGugAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 126918 | 0.7 | 0.949613 |
Target: 5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3' miRNA: 3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5' |
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6514 | 5' | -50 | NC_001847.1 | + | 20270 | 0.7 | 0.929792 |
Target: 5'- gACGGcGAGGucGGcGCCGCGCgUCGGAa -3' miRNA: 3'- -UGUUaCUUCuuUCuCGGCGUG-AGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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