miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 5' -50 NC_001847.1 + 92101 0.67 0.98578
Target:  5'- -gGAUGAGGAAGGAGUaguuggaguagCGCACcuuuUCGGc -3'
miRNA:   3'- ugUUACUUCUUUCUCG-----------GCGUG----AGCCu -5'
6514 5' -50 NC_001847.1 + 34660 0.67 0.98578
Target:  5'- cGCGccGAGGggGcGGCCGCGCagCGGc -3'
miRNA:   3'- -UGUuaCUUCuuUcUCGGCGUGa-GCCu -5'
6514 5' -50 NC_001847.1 + 76695 0.67 0.983914
Target:  5'- uGCuuuGUGGcgcGGGAGGAGgCGCGC-CGGGa -3'
miRNA:   3'- -UGu--UACU---UCUUUCUCgGCGUGaGCCU- -5'
6514 5' -50 NC_001847.1 + 21927 0.67 0.983914
Target:  5'- gGCGAggcgGAGGAGAGGaCCGCgGCUCGcGGc -3'
miRNA:   3'- -UGUUa---CUUCUUUCUcGGCG-UGAGC-CU- -5'
6514 5' -50 NC_001847.1 + 65096 0.67 0.983914
Target:  5'- gGCGAUcGAGAA--GGCCGCGCUCa-- -3'
miRNA:   3'- -UGUUAcUUCUUucUCGGCGUGAGccu -5'
6514 5' -50 NC_001847.1 + 2492 0.68 0.981868
Target:  5'- cGCcguGUGAAGAcgucgcGAGGGCCGC-CUCGc- -3'
miRNA:   3'- -UGu--UACUUCU------UUCUCGGCGuGAGCcu -5'
6514 5' -50 NC_001847.1 + 83393 0.68 0.979633
Target:  5'- uCGAUGuccuccuuGGAGAGcAGCCGCGC-CGGc -3'
miRNA:   3'- uGUUACu-------UCUUUC-UCGGCGUGaGCCu -5'
6514 5' -50 NC_001847.1 + 65091 0.68 0.979633
Target:  5'- gGCAGUGcuaagcugcGAgcGAGCCGCgGCUCGGc -3'
miRNA:   3'- -UGUUACuu-------CUuuCUCGGCG-UGAGCCu -5'
6514 5' -50 NC_001847.1 + 65426 0.68 0.979633
Target:  5'- uGCuccgGGAGgcGGcAGCCGCGCgccgCGGAc -3'
miRNA:   3'- -UGuua-CUUCuuUC-UCGGCGUGa---GCCU- -5'
6514 5' -50 NC_001847.1 + 11222 0.68 0.979633
Target:  5'- -aAGUGggGccucuggugGAGGAGCCGCcguuUUCGGGa -3'
miRNA:   3'- ugUUACuuC---------UUUCUCGGCGu---GAGCCU- -5'
6514 5' -50 NC_001847.1 + 59550 0.68 0.9717
Target:  5'- gGCGGUGggGGcggcGGGGGCgGUGCcggCGGAa -3'
miRNA:   3'- -UGUUACuuCU----UUCUCGgCGUGa--GCCU- -5'
6514 5' -50 NC_001847.1 + 90331 0.69 0.965306
Target:  5'- cCGAcUGggGcgcGGuGCCGCGCUCGGc -3'
miRNA:   3'- uGUU-ACuuCuu-UCuCGGCGUGAGCCu -5'
6514 5' -50 NC_001847.1 + 122399 0.69 0.953913
Target:  5'- cGCGAaGAAGGcgcuGGGCCGCACcCGGc -3'
miRNA:   3'- -UGUUaCUUCUuu--CUCGGCGUGaGCCu -5'
6514 5' -50 NC_001847.1 + 134520 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5'
6514 5' -50 NC_001847.1 + 67002 0.69 0.953913
Target:  5'- gGCGccGGAGAAGGGGCagacgCGCGCUCGc- -3'
miRNA:   3'- -UGUuaCUUCUUUCUCG-----GCGUGAGCcu -5'
6514 5' -50 NC_001847.1 + 31707 0.69 0.953913
Target:  5'- gGCGG-GggGAGGcgcGGGCCGCGCgccgcugCGGAg -3'
miRNA:   3'- -UGUUaCuuCUUU---CUCGGCGUGa------GCCU- -5'
6514 5' -50 NC_001847.1 + 96197 0.69 0.953495
Target:  5'- gGCAAUGGcggggccGGAGucGGGGCCGgAgUCGGGg -3'
miRNA:   3'- -UGUUACU-------UCUU--UCUCGGCgUgAGCCU- -5'
6514 5' -50 NC_001847.1 + 24105 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 126918 0.7 0.949613
Target:  5'- gGCGcgGGucccAGGGCuCGCACUCGGGc -3'
miRNA:   3'- -UGUuaCUucuuUCUCG-GCGUGAGCCU- -5'
6514 5' -50 NC_001847.1 + 115914 0.7 0.945053
Target:  5'- gACGGgaucGAAGggGGGGCUGCcgUCGGGa -3'
miRNA:   3'- -UGUUa---CUUCuuUCUCGGCGugAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.