Results 1 - 20 of 425 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 44081 | 0.66 | 0.785255 |
Target: 5'- cCCCCcaaaGCCgACCGCGUGUGCgGCc -3' miRNA: 3'- -GGGGcacaUGG-UGGUGUACGCGgCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 20112 | 0.66 | 0.785255 |
Target: 5'- gCCCCGgacucGCCGCCcuCAUggcGCGCgGCGa -3' miRNA: 3'- -GGGGCaca--UGGUGGu-GUA---CGCGgCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 12054 | 0.66 | 0.794202 |
Target: 5'- gCCCUGcGcGCUgcggacgccgagGCCGCGgaGCGCCGCGg -3' miRNA: 3'- -GGGGCaCaUGG------------UGGUGUa-CGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 79819 | 0.66 | 0.803008 |
Target: 5'- -aCCGUGgcCCGCUGCcggaagugGCGaCCGCGg -3' miRNA: 3'- ggGGCACauGGUGGUGua------CGC-GGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 4535 | 0.66 | 0.803008 |
Target: 5'- gCCUCGcGgcgGCCGcCCGCGggugGCGCgGCGu -3' miRNA: 3'- -GGGGCaCa--UGGU-GGUGUa---CGCGgCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 131802 | 0.66 | 0.794202 |
Target: 5'- cCCCCaUGgcCUACCcggagGCcgGCGCCgGCGg -3' miRNA: 3'- -GGGGcACauGGUGG-----UGuaCGCGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 68935 | 0.66 | 0.785255 |
Target: 5'- gCCCGa--GCCGCCGCugggcgGCGCCgauGCGg -3' miRNA: 3'- gGGGCacaUGGUGGUGua----CGCGG---CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 20591 | 0.66 | 0.803008 |
Target: 5'- gCCgCUGUGUACCA--GCAUGCcCuCGCGg -3' miRNA: 3'- -GG-GGCACAUGGUggUGUACGcG-GCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 120225 | 0.66 | 0.794202 |
Target: 5'- gCCuuGUGUAUCGCgGCGaggcagucggccUGCG-CGCGg -3' miRNA: 3'- -GGggCACAUGGUGgUGU------------ACGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 3196 | 0.66 | 0.803008 |
Target: 5'- gCCgCCGUcgccGCCAUCGCcgGCGCaCGUGc -3' miRNA: 3'- -GG-GGCAca--UGGUGGUGuaCGCG-GCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 83036 | 0.66 | 0.803008 |
Target: 5'- gCCCGcg-GCCGCUaguGCGcuUGgGCCGCGg -3' miRNA: 3'- gGGGCacaUGGUGG---UGU--ACgCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 131868 | 0.66 | 0.794202 |
Target: 5'- gCgCCGUGcucGCCgGCCGCGcgGCGCCgGCGc -3' miRNA: 3'- -GgGGCACa--UGG-UGGUGUa-CGCGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 1089 | 0.66 | 0.803008 |
Target: 5'- uCCCCGccUGUGacucuggagaCGCCGCGUGCcCCuGCGa -3' miRNA: 3'- -GGGGC--ACAUg---------GUGGUGUACGcGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 63529 | 0.66 | 0.802134 |
Target: 5'- gCgCGUGUccgcgcugcuggcGCCGCCugGgccgGCGCCGgGc -3' miRNA: 3'- gGgGCACA-------------UGGUGGugUa---CGCGGCgC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 115734 | 0.66 | 0.794202 |
Target: 5'- cUCCCGcuuUGCCuGCUGCGU-CGCCGCGg -3' miRNA: 3'- -GGGGCac-AUGG-UGGUGUAcGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 66218 | 0.66 | 0.785255 |
Target: 5'- gCCCGcg-GCCGCCGCGccgaaccucaGCGCgGCGg -3' miRNA: 3'- gGGGCacaUGGUGGUGUa---------CGCGgCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 42792 | 0.66 | 0.803008 |
Target: 5'- gCCUCGcgGcGCCGCC-C-UGUGCCGUGg -3' miRNA: 3'- -GGGGCa-CaUGGUGGuGuACGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 90719 | 0.66 | 0.828502 |
Target: 5'- cCCCCGUGcGCgaacgcaGCCGCucGCGgCGCGu -3' miRNA: 3'- -GGGGCACaUGg------UGGUGuaCGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 32287 | 0.66 | 0.794202 |
Target: 5'- uCCgCGUGgcgcgGCC-CCGCGacgcCGCCGCGg -3' miRNA: 3'- -GGgGCACa----UGGuGGUGUac--GCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 112835 | 0.66 | 0.794202 |
Target: 5'- uUCCGcUGcAUCGCCACcgGCuCCGCGu -3' miRNA: 3'- gGGGC-ACaUGGUGGUGuaCGcGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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