miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 619 1.11 0.00131
Target:  5'- gCCCCGUGUACCACCACAUGCGCCGCGg -3'
miRNA:   3'- -GGGGCACAUGGUGGUGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 84333 0.83 0.100645
Target:  5'- cCCCCGUaaaaccGUACCgGCCGCA-GCGCCGCGa -3'
miRNA:   3'- -GGGGCA------CAUGG-UGGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 30610 0.81 0.143955
Target:  5'- gCCCCGgg-GCCGCCGCGcaGCGCCGCa -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa-CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 88523 0.78 0.208678
Target:  5'- aCCUGUGcuUCACCACgcucGUGCGCCGCGa -3'
miRNA:   3'- gGGGCACauGGUGGUG----UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 60998 0.78 0.224321
Target:  5'- gCgCCGUcgagGCCGCCAUcgGCGCCGCGc -3'
miRNA:   3'- -GgGGCAca--UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27431 0.78 0.224321
Target:  5'- gCCCCGggGUGCCcgcCCGCGaGCGCCGCc -3'
miRNA:   3'- -GGGGCa-CAUGGu--GGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 18419 0.77 0.235295
Target:  5'- --gCGUGcaggGCCuugGCCACGUGCGCCGCGg -3'
miRNA:   3'- gggGCACa---UGG---UGGUGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 40746 0.77 0.246716
Target:  5'- gCCCCGUcgcgGUACUgcGCCGaauCGUGCGCCGCa -3'
miRNA:   3'- -GGGGCA----CAUGG--UGGU---GUACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 63582 0.77 0.252597
Target:  5'- cCCUCGUGUucgACCGCCACcccGUG-GCCGCGu -3'
miRNA:   3'- -GGGGCACA---UGGUGGUG---UACgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 52584 0.77 0.258593
Target:  5'- gCUCCGUGUACCGCgCGCGgUGCGCUuCGg -3'
miRNA:   3'- -GGGGCACAUGGUG-GUGU-ACGCGGcGC- -5'
6515 3' -58.4 NC_001847.1 + 75809 0.77 0.264704
Target:  5'- cCCCCGaugccgggcugGUACggCGCCGCcgGCGCCGCGc -3'
miRNA:   3'- -GGGGCa----------CAUG--GUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 83733 0.76 0.270932
Target:  5'- gCUCCGUcuGcGCCGCCGCAagguucgGCGCCGCGa -3'
miRNA:   3'- -GGGGCA--CaUGGUGGUGUa------CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 75937 0.76 0.290323
Target:  5'- gCCgCCGUGcGCCGCCACAcGCGgCGUGu -3'
miRNA:   3'- -GG-GGCACaUGGUGGUGUaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 101013 0.76 0.290323
Target:  5'- gCCgCGgcgGCCACCGCGgcagGCGCCGCa -3'
miRNA:   3'- -GGgGCacaUGGUGGUGUa---CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 55924 0.76 0.297024
Target:  5'- gCCCGUGauCCGCgGCcgGCGUCGCGa -3'
miRNA:   3'- gGGGCACauGGUGgUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 65686 0.76 0.303845
Target:  5'- gCCCCGcc-GCCGCCGCGcgcGCGCCGCc -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa--CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 117293 0.75 0.315715
Target:  5'- gCCCCGcgcccgacgaccucUGUuUCGCCgACGUGCGCCGCa -3'
miRNA:   3'- -GGGGC--------------ACAuGGUGG-UGUACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 30712 0.75 0.317845
Target:  5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133525 0.75 0.317845
Target:  5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 103177 0.75 0.317845
Target:  5'- gCCCCGgGgcCCGCCcCGcGCGCCGCGc -3'
miRNA:   3'- -GGGGCaCauGGUGGuGUaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.