Results 1 - 20 of 425 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 37211 | 0.73 | 0.40334 |
Target: 5'- gCCCG-GUGCCGCUugGcgGCGgCGCGg -3' miRNA: 3'- gGGGCaCAUGGUGGugUa-CGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 48668 | 0.74 | 0.354942 |
Target: 5'- gCCUCGUcguccGUGCCGCCGUcgGCGCCGuCGg -3' miRNA: 3'- -GGGGCA-----CAUGGUGGUGuaCGCGGC-GC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 106527 | 0.74 | 0.354942 |
Target: 5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3' miRNA: 3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 43892 | 0.74 | 0.362719 |
Target: 5'- aCCCCaUGUG-CGCCGCGUGCgGCUGCa -3' miRNA: 3'- -GGGGcACAUgGUGGUGUACG-CGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 96177 | 0.74 | 0.362719 |
Target: 5'- gCCCCGccgcgGCCGCCGCcaugGCGCuCGCGg -3' miRNA: 3'- -GGGGCaca--UGGUGGUGua--CGCG-GCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 101069 | 0.74 | 0.362719 |
Target: 5'- gCCCCGgg-GCCGCCGCggGgGCCGgGu -3' miRNA: 3'- -GGGGCacaUGGUGGUGuaCgCGGCgC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 93041 | 0.74 | 0.369818 |
Target: 5'- cCCCCGgcgccuggacgGUGCCggcACCGCGaggccgaUGCGCCGCa -3' miRNA: 3'- -GGGGCa----------CAUGG---UGGUGU-------ACGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 82455 | 0.74 | 0.386748 |
Target: 5'- aCCCCGcGcACgGCCGCGUGCGgCGUGc -3' miRNA: 3'- -GGGGCaCaUGgUGGUGUACGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 133658 | 0.73 | 0.394988 |
Target: 5'- aCCCCGagGcGCCGCCGC-UGCggcucuGCCGCGg -3' miRNA: 3'- -GGGGCa-CaUGGUGGUGuACG------CGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 113197 | 0.75 | 0.325025 |
Target: 5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3' miRNA: 3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 103177 | 0.75 | 0.317845 |
Target: 5'- gCCCCGgGgcCCGCCcCGcGCGCCGCGc -3' miRNA: 3'- -GGGGCaCauGGUGGuGUaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 133525 | 0.75 | 0.317845 |
Target: 5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3' miRNA: 3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 84333 | 0.83 | 0.100645 |
Target: 5'- cCCCCGUaaaaccGUACCgGCCGCA-GCGCCGCGa -3' miRNA: 3'- -GGGGCA------CAUGG-UGGUGUaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 30610 | 0.81 | 0.143955 |
Target: 5'- gCCCCGgg-GCCGCCGCGcaGCGCCGCa -3' miRNA: 3'- -GGGGCacaUGGUGGUGUa-CGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 27431 | 0.78 | 0.224321 |
Target: 5'- gCCCCGggGUGCCcgcCCGCGaGCGCCGCc -3' miRNA: 3'- -GGGGCa-CAUGGu--GGUGUaCGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 60998 | 0.78 | 0.224321 |
Target: 5'- gCgCCGUcgagGCCGCCAUcgGCGCCGCGc -3' miRNA: 3'- -GgGGCAca--UGGUGGUGuaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 18419 | 0.77 | 0.235295 |
Target: 5'- --gCGUGcaggGCCuugGCCACGUGCGCCGCGg -3' miRNA: 3'- gggGCACa---UGG---UGGUGUACGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 63582 | 0.77 | 0.252597 |
Target: 5'- cCCUCGUGUucgACCGCCACcccGUG-GCCGCGu -3' miRNA: 3'- -GGGGCACA---UGGUGGUG---UACgCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 75937 | 0.76 | 0.290323 |
Target: 5'- gCCgCCGUGcGCCGCCACAcGCGgCGUGu -3' miRNA: 3'- -GG-GGCACaUGGUGGUGUaCGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 117293 | 0.75 | 0.315715 |
Target: 5'- gCCCCGcgcccgacgaccucUGUuUCGCCgACGUGCGCCGCa -3' miRNA: 3'- -GGGGC--------------ACAuGGUGG-UGUACGCGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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