Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6515 | 5' | -51 | NC_001847.1 | + | 656 | 1.1 | 0.006894 |
Target: 5'- cCACACUACACCCGUGCACUUCGUUGGc -3' miRNA: 3'- -GUGUGAUGUGGGCACGUGAAGCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 43149 | 0.78 | 0.52874 |
Target: 5'- gGCGCUGCGCCCGcagucgcuggcgacUGCGCUgcugaGUUGGa -3' miRNA: 3'- gUGUGAUGUGGGC--------------ACGUGAag---CAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 23150 | 0.75 | 0.710226 |
Target: 5'- gCGCugUACACCCGcgagUGCaccACUUCGaUGGa -3' miRNA: 3'- -GUGugAUGUGGGC----ACG---UGAAGCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 72624 | 0.72 | 0.867577 |
Target: 5'- gGCACgugcCGCCCGUgccGCACUUUGU-GGg -3' miRNA: 3'- gUGUGau--GUGGGCA---CGUGAAGCAaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 72021 | 0.71 | 0.896562 |
Target: 5'- uGCACaACcgACCCGUGCGCggCGgcGGc -3' miRNA: 3'- gUGUGaUG--UGGGCACGUGaaGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 131338 | 0.7 | 0.90959 |
Target: 5'- gCGCGCcGCcgccgcccgGCCgCGUGCGCUUCGgcGGc -3' miRNA: 3'- -GUGUGaUG---------UGG-GCACGUGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 28525 | 0.7 | 0.90959 |
Target: 5'- gCGCGCcGCcgccgcccgGCCgCGUGCGCUUCGgcGGc -3' miRNA: 3'- -GUGUGaUG---------UGG-GCACGUGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 82595 | 0.7 | 0.921029 |
Target: 5'- aGCGCUcgcggcgGCGCCUGUGCGCcgcgCGcUGGa -3' miRNA: 3'- gUGUGA-------UGUGGGCACGUGaa--GCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 24532 | 0.7 | 0.932597 |
Target: 5'- gCGCGCUGCACgauuuCCGUGCAgag-GUUGGa -3' miRNA: 3'- -GUGUGAUGUG-----GGCACGUgaagCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 74015 | 0.7 | 0.932597 |
Target: 5'- cCACGCUGCGCCggcgCGUGcCGCUggCGgacgUGGc -3' miRNA: 3'- -GUGUGAUGUGG----GCAC-GUGAa-GCa---ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 49712 | 0.69 | 0.942564 |
Target: 5'- gGCGCgGCGCCCGUGCAag----UGGg -3' miRNA: 3'- gUGUGaUGUGGGCACGUgaagcaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 53984 | 0.69 | 0.947168 |
Target: 5'- cCACGuCUucCGCCCG-GCGCcgCGUUGGc -3' miRNA: 3'- -GUGU-GAu-GUGGGCaCGUGaaGCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 49923 | 0.69 | 0.951521 |
Target: 5'- gGCGCUGCGC--GUGCGCa-CGUUGGa -3' miRNA: 3'- gUGUGAUGUGggCACGUGaaGCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 33765 | 0.69 | 0.955626 |
Target: 5'- aCGCGCUguuGCugCCGcUGCaggGCUUCGcgGGg -3' miRNA: 3'- -GUGUGA---UGugGGC-ACG---UGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 131405 | 0.68 | 0.963115 |
Target: 5'- aGCGCUGCacgGCCgCGUGCGCgcCG-UGGc -3' miRNA: 3'- gUGUGAUG---UGG-GCACGUGaaGCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 47919 | 0.68 | 0.97262 |
Target: 5'- aGCGCUGCGCa---GCGCUUCcaGUUGGa -3' miRNA: 3'- gUGUGAUGUGggcaCGUGAAG--CAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 90028 | 0.68 | 0.975354 |
Target: 5'- --aGCUGCACC--UGCGCUUCGagGGc -3' miRNA: 3'- gugUGAUGUGGgcACGUGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 37715 | 0.68 | 0.975354 |
Target: 5'- gCGCGCUGCugCUGgGCGCgccgguugUCGUggccaUGGa -3' miRNA: 3'- -GUGUGAUGugGGCaCGUGa-------AGCA-----ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 16607 | 0.67 | 0.977883 |
Target: 5'- aAUugUACAUgCGUGguCUUUGggGGg -3' miRNA: 3'- gUGugAUGUGgGCACguGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 49808 | 0.67 | 0.977883 |
Target: 5'- uGCGCUGCugCUGggcGCGCUggCGgccUGGa -3' miRNA: 3'- gUGUGAUGugGGCa--CGUGAa-GCa--ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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