miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 5' -51 NC_001847.1 + 656 1.1 0.006894
Target:  5'- cCACACUACACCCGUGCACUUCGUUGGc -3'
miRNA:   3'- -GUGUGAUGUGGGCACGUGAAGCAACC- -5'
6515 5' -51 NC_001847.1 + 3742 0.66 0.989229
Target:  5'- gCGCAC-GCGgCCGUGCagcGCUUCGUc-- -3'
miRNA:   3'- -GUGUGaUGUgGGCACG---UGAAGCAacc -5'
6515 5' -51 NC_001847.1 + 10068 0.67 0.986118
Target:  5'- gCGCGCUGCG-CCGcGCGCU-CGUcGGc -3'
miRNA:   3'- -GUGUGAUGUgGGCaCGUGAaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 16607 0.67 0.977883
Target:  5'- aAUugUACAUgCGUGguCUUUGggGGg -3'
miRNA:   3'- gUGugAUGUGgGCACguGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 23150 0.75 0.710226
Target:  5'- gCGCugUACACCCGcgagUGCaccACUUCGaUGGa -3'
miRNA:   3'- -GUGugAUGUGGGC----ACG---UGAAGCaACC- -5'
6515 5' -51 NC_001847.1 + 23521 0.66 0.992846
Target:  5'- gCACACgaggucgcCGCCCGUGaagACgccgUUGUUGGu -3'
miRNA:   3'- -GUGUGau------GUGGGCACg--UGa---AGCAACC- -5'
6515 5' -51 NC_001847.1 + 24532 0.7 0.932597
Target:  5'- gCGCGCUGCACgauuuCCGUGCAgag-GUUGGa -3'
miRNA:   3'- -GUGUGAUGUG-----GGCACGUgaagCAACC- -5'
6515 5' -51 NC_001847.1 + 24795 0.66 0.989229
Target:  5'- cCACACaACGCCCucgcgGC-CUUCGaggUGGg -3'
miRNA:   3'- -GUGUGaUGUGGGca---CGuGAAGCa--ACC- -5'
6515 5' -51 NC_001847.1 + 28525 0.7 0.90959
Target:  5'- gCGCGCcGCcgccgcccgGCCgCGUGCGCUUCGgcGGc -3'
miRNA:   3'- -GUGUGaUG---------UGG-GCACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 28665 0.66 0.990566
Target:  5'- gCGCGCUcgucGCACgaCGUGCGCguaUCGgcGGc -3'
miRNA:   3'- -GUGUGA----UGUGg-GCACGUGa--AGCaaCC- -5'
6515 5' -51 NC_001847.1 + 30145 0.66 0.991768
Target:  5'- aCGCGCgGCGCgCCGUGCGCccugggugCG-UGGc -3'
miRNA:   3'- -GUGUGaUGUG-GGCACGUGaa------GCaACC- -5'
6515 5' -51 NC_001847.1 + 30224 0.67 0.980216
Target:  5'- cCGCGC-GCGCCCGggccgaggUGCGCgugUCGcUGGc -3'
miRNA:   3'- -GUGUGaUGUGGGC--------ACGUGa--AGCaACC- -5'
6515 5' -51 NC_001847.1 + 33765 0.69 0.955626
Target:  5'- aCGCGCUguuGCugCCGcUGCaggGCUUCGcgGGg -3'
miRNA:   3'- -GUGUGA---UGugGGC-ACG---UGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 37715 0.68 0.975354
Target:  5'- gCGCGCUGCugCUGgGCGCgccgguugUCGUggccaUGGa -3'
miRNA:   3'- -GUGUGAUGugGGCaCGUGa-------AGCA-----ACC- -5'
6515 5' -51 NC_001847.1 + 39808 0.66 0.990566
Target:  5'- cCugGCUGCGCCCccUGCGcCUUCGg--- -3'
miRNA:   3'- -GugUGAUGUGGGc-ACGU-GAAGCaacc -5'
6515 5' -51 NC_001847.1 + 43149 0.78 0.52874
Target:  5'- gGCGCUGCGCCCGcagucgcuggcgacUGCGCUgcugaGUUGGa -3'
miRNA:   3'- gUGUGAUGUGGGC--------------ACGUGAag---CAACC- -5'
6515 5' -51 NC_001847.1 + 47919 0.68 0.97262
Target:  5'- aGCGCUGCGCa---GCGCUUCcaGUUGGa -3'
miRNA:   3'- gUGUGAUGUGggcaCGUGAAG--CAACC- -5'
6515 5' -51 NC_001847.1 + 49618 0.67 0.98236
Target:  5'- gCGCGCgcCACCCG-GCGCUguuuUUGGa -3'
miRNA:   3'- -GUGUGauGUGGGCaCGUGAagc-AACC- -5'
6515 5' -51 NC_001847.1 + 49712 0.69 0.942564
Target:  5'- gGCGCgGCGCCCGUGCAag----UGGg -3'
miRNA:   3'- gUGUGaUGUGGGCACGUgaagcaACC- -5'
6515 5' -51 NC_001847.1 + 49808 0.67 0.977883
Target:  5'- uGCGCUGCugCUGggcGCGCUggCGgccUGGa -3'
miRNA:   3'- gUGUGAUGugGGCa--CGUGAa-GCa--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.