miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 5' -51 NC_001847.1 + 112881 0.67 0.986118
Target:  5'- gCGCGCUGCG-CCGcGCGCU-CGUcGGc -3'
miRNA:   3'- -GUGUGAUGUgGGCaCGUGAaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 33765 0.69 0.955626
Target:  5'- aCGCGCUguuGCugCCGcUGCaggGCUUCGcgGGg -3'
miRNA:   3'- -GUGUGA---UGugGGC-ACG---UGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 37715 0.68 0.975354
Target:  5'- gCGCGCUGCugCUGgGCGCgccgguugUCGUggccaUGGa -3'
miRNA:   3'- -GUGUGAUGugGGCaCGUGa-------AGCA-----ACC- -5'
6515 5' -51 NC_001847.1 + 90028 0.68 0.975354
Target:  5'- --aGCUGCACC--UGCGCUUCGagGGc -3'
miRNA:   3'- gugUGAUGUGGgcACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 16607 0.67 0.977883
Target:  5'- aAUugUACAUgCGUGguCUUUGggGGg -3'
miRNA:   3'- gUGugAUGUGgGCACguGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 86504 0.67 0.980216
Target:  5'- gGCGCUGCA-CCGUcGCGCggCGgcUGGg -3'
miRNA:   3'- gUGUGAUGUgGGCA-CGUGaaGCa-ACC- -5'
6515 5' -51 NC_001847.1 + 30224 0.67 0.980216
Target:  5'- cCGCGC-GCGCCCGggccgaggUGCGCgugUCGcUGGc -3'
miRNA:   3'- -GUGUGaUGUGGGC--------ACGUGa--AGCaACC- -5'
6515 5' -51 NC_001847.1 + 50528 0.67 0.984324
Target:  5'- uCGCGCUGgacCACCUG-GCGCUggCGUgcgGGu -3'
miRNA:   3'- -GUGUGAU---GUGGGCaCGUGAa-GCAa--CC- -5'
6515 5' -51 NC_001847.1 + 66301 0.67 0.986118
Target:  5'- cCGCGCUcGCGCCCGaGCuCUUCGc-GGc -3'
miRNA:   3'- -GUGUGA-UGUGGGCaCGuGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 49923 0.69 0.951521
Target:  5'- gGCGCUGCGC--GUGCGCa-CGUUGGa -3'
miRNA:   3'- gUGUGAUGUGggCACGUGaaGCAACC- -5'
6515 5' -51 NC_001847.1 + 53984 0.69 0.947168
Target:  5'- cCACGuCUucCGCCCG-GCGCcgCGUUGGc -3'
miRNA:   3'- -GUGU-GAu-GUGGGCaCGUGaaGCAACC- -5'
6515 5' -51 NC_001847.1 + 49712 0.69 0.942564
Target:  5'- gGCGCgGCGCCCGUGCAag----UGGg -3'
miRNA:   3'- gUGUGaUGUGGGCACGUgaagcaACC- -5'
6515 5' -51 NC_001847.1 + 43149 0.78 0.52874
Target:  5'- gGCGCUGCGCCCGcagucgcuggcgacUGCGCUgcugaGUUGGa -3'
miRNA:   3'- gUGUGAUGUGGGC--------------ACGUGAag---CAACC- -5'
6515 5' -51 NC_001847.1 + 23150 0.75 0.710226
Target:  5'- gCGCugUACACCCGcgagUGCaccACUUCGaUGGa -3'
miRNA:   3'- -GUGugAUGUGGGC----ACG---UGAAGCaACC- -5'
6515 5' -51 NC_001847.1 + 72624 0.72 0.867577
Target:  5'- gGCACgugcCGCCCGUgccGCACUUUGU-GGg -3'
miRNA:   3'- gUGUGau--GUGGGCA---CGUGAAGCAaCC- -5'
6515 5' -51 NC_001847.1 + 72021 0.71 0.896562
Target:  5'- uGCACaACcgACCCGUGCGCggCGgcGGc -3'
miRNA:   3'- gUGUGaUG--UGGGCACGUGaaGCaaCC- -5'
6515 5' -51 NC_001847.1 + 131338 0.7 0.90959
Target:  5'- gCGCGCcGCcgccgcccgGCCgCGUGCGCUUCGgcGGc -3'
miRNA:   3'- -GUGUGaUG---------UGG-GCACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 82595 0.7 0.921029
Target:  5'- aGCGCUcgcggcgGCGCCUGUGCGCcgcgCGcUGGa -3'
miRNA:   3'- gUGUGA-------UGUGGGCACGUGaa--GCaACC- -5'
6515 5' -51 NC_001847.1 + 24532 0.7 0.932597
Target:  5'- gCGCGCUGCACgauuuCCGUGCAgag-GUUGGa -3'
miRNA:   3'- -GUGUGAUGUG-----GGCACGUgaagCAACC- -5'
6515 5' -51 NC_001847.1 + 74015 0.7 0.932597
Target:  5'- cCACGCUGCGCCggcgCGUGcCGCUggCGgacgUGGc -3'
miRNA:   3'- -GUGUGAUGUGG----GCAC-GUGAa-GCa---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.