miRNA display CGI


Results 1 - 20 of 955 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 3' -59.5 NC_001847.1 + 22899 0.66 0.765331
Target:  5'- uGCAagaGCAUggcugggCUGgGCUGGGGUGgGCUg -3'
miRNA:   3'- -CGUg--CGUGa------GACgCGGCCUCGCgUGG- -5'
6517 3' -59.5 NC_001847.1 + 21009 0.66 0.765331
Target:  5'- cCGCGCGCggCUGUGCgGGcgacccuGCGCAg- -3'
miRNA:   3'- cGUGCGUGa-GACGCGgCCu------CGCGUgg -5'
6517 3' -59.5 NC_001847.1 + 73054 0.66 0.765331
Target:  5'- uGCugGCGaagCaacGCGCCGcGGGCGCGg- -3'
miRNA:   3'- -CGugCGUga-Ga--CGCGGC-CUCGCGUgg -5'
6517 3' -59.5 NC_001847.1 + 36110 0.66 0.765331
Target:  5'- -gACGCGCUggGCGCCuuccacGAagccgcGCGCGCCg -3'
miRNA:   3'- cgUGCGUGAgaCGCGGc-----CU------CGCGUGG- -5'
6517 3' -59.5 NC_001847.1 + 98576 0.66 0.765331
Target:  5'- cGCACGCGggaaguccaUUgggGCGCCGGcgcuugggcGGCGCGgCa -3'
miRNA:   3'- -CGUGCGUg--------AGa--CGCGGCC---------UCGCGUgG- -5'
6517 3' -59.5 NC_001847.1 + 23138 0.66 0.765331
Target:  5'- aGCA-GCugUaugGCGCUGuacacccgcGAGUGCACCa -3'
miRNA:   3'- -CGUgCGugAga-CGCGGC---------CUCGCGUGG- -5'
6517 3' -59.5 NC_001847.1 + 100369 0.66 0.765331
Target:  5'- cCGCGCGC-C-GCgGCCGcGGCGCGCa -3'
miRNA:   3'- cGUGCGUGaGaCG-CGGCcUCGCGUGg -5'
6517 3' -59.5 NC_001847.1 + 55664 0.66 0.765331
Target:  5'- uGCGCGCcgcgcuccgGCUCgcgcagGCgGCCGGGGaaaacuCGCGCUu -3'
miRNA:   3'- -CGUGCG---------UGAGa-----CG-CGGCCUC------GCGUGG- -5'
6517 3' -59.5 NC_001847.1 + 120727 0.66 0.765331
Target:  5'- gGCAguCGCGacccgCUGCGagCGGGGCcucGCGCCa -3'
miRNA:   3'- -CGU--GCGUga---GACGCg-GCCUCG---CGUGG- -5'
6517 3' -59.5 NC_001847.1 + 117023 0.66 0.765331
Target:  5'- gGCGCucCugUCUGCccgGCgGGGGCuCGCCg -3'
miRNA:   3'- -CGUGc-GugAGACG---CGgCCUCGcGUGG- -5'
6517 3' -59.5 NC_001847.1 + 11758 0.66 0.765331
Target:  5'- cGCACGagGCUUUGUGU--GAGCGCuCCa -3'
miRNA:   3'- -CGUGCg-UGAGACGCGgcCUCGCGuGG- -5'
6517 3' -59.5 NC_001847.1 + 38275 0.66 0.765331
Target:  5'- cGCACGCGCgg-GCGgCGGcagguGGCgGCAgCg -3'
miRNA:   3'- -CGUGCGUGagaCGCgGCC-----UCG-CGUgG- -5'
6517 3' -59.5 NC_001847.1 + 63869 0.66 0.765331
Target:  5'- nCAUGCGCgacggCUgggacGCGCUGGAGUGgGCg -3'
miRNA:   3'- cGUGCGUGa----GA-----CGCGGCCUCGCgUGg -5'
6517 3' -59.5 NC_001847.1 + 49617 0.66 0.765331
Target:  5'- gGCGCGCGCcacccgGCGCUguuuuuGGAGaCGCcgACCa -3'
miRNA:   3'- -CGUGCGUGaga---CGCGG------CCUC-GCG--UGG- -5'
6517 3' -59.5 NC_001847.1 + 45571 0.66 0.765331
Target:  5'- gGCGuCGCGCUCcacgcccuCGCCGG-GCGCGa- -3'
miRNA:   3'- -CGU-GCGUGAGac------GCGGCCuCGCGUgg -5'
6517 3' -59.5 NC_001847.1 + 18110 0.66 0.765331
Target:  5'- uGCuccaGCAgCUCcgcgGCGgUGGGGCGCGCg -3'
miRNA:   3'- -CGug--CGU-GAGa---CGCgGCCUCGCGUGg -5'
6517 3' -59.5 NC_001847.1 + 81731 0.66 0.765331
Target:  5'- gGCACGCGCcCUccaGCCccauGGuGCGCGCa -3'
miRNA:   3'- -CGUGCGUGaGAcg-CGG----CCuCGCGUGg -5'
6517 3' -59.5 NC_001847.1 + 59216 0.66 0.765331
Target:  5'- cGCGCcguGCGCUUgcacGCGUCGGccgucggcgauGGCGCcgGCCa -3'
miRNA:   3'- -CGUG---CGUGAGa---CGCGGCC-----------UCGCG--UGG- -5'
6517 3' -59.5 NC_001847.1 + 103147 0.66 0.764401
Target:  5'- gGCGCGCgaagguccucgcgGCUCgagggcgGCGUccaCGGGGCcCGCCg -3'
miRNA:   3'- -CGUGCG-------------UGAGa------CGCG---GCCUCGcGUGG- -5'
6517 3' -59.5 NC_001847.1 + 56240 0.66 0.761606
Target:  5'- uGCACGagguagagGCGCCGGucuGCGUACg -3'
miRNA:   3'- -CGUGCgugaga--CGCGGCCu--CGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.