miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 98801 0.66 0.989011
Target:  5'- -uGGCGCGCCGcggcgcGCggCACGAGCu--- -3'
miRNA:   3'- auCUGCGCGGU------UGuaGUGCUUGuaca -5'
6517 5' -50.6 NC_001847.1 + 14713 0.66 0.989011
Target:  5'- -cGACGCGCgGGCAggagGCGAACGcgGUc -3'
miRNA:   3'- auCUGCGCGgUUGUag--UGCUUGUa-CA- -5'
6517 5' -50.6 NC_001847.1 + 52992 0.66 0.989011
Target:  5'- gGGACGCGCaGGCAUgGCGGAg---- -3'
miRNA:   3'- aUCUGCGCGgUUGUAgUGCUUguaca -5'
6517 5' -50.6 NC_001847.1 + 37917 0.66 0.989011
Target:  5'- --cGCGUGCCGACGgcgcagCugGAGCAgcUGUc -3'
miRNA:   3'- aucUGCGCGGUUGUa-----GugCUUGU--ACA- -5'
6517 5' -50.6 NC_001847.1 + 87932 0.66 0.987476
Target:  5'- cUGGGCGCgGCCGcGCA-CGCGGugaGCGUGUu -3'
miRNA:   3'- -AUCUGCG-CGGU-UGUaGUGCU---UGUACA- -5'
6517 5' -50.6 NC_001847.1 + 49728 0.66 0.987476
Target:  5'- aAGugGgCGCCGGCGagGCGGugcGCGUGc -3'
miRNA:   3'- aUCugC-GCGGUUGUagUGCU---UGUACa -5'
6517 5' -50.6 NC_001847.1 + 15300 0.66 0.987476
Target:  5'- cUGGcuGCGCGCgGGCGUgCGCGAcccguACAUGa -3'
miRNA:   3'- -AUC--UGCGCGgUUGUA-GUGCU-----UGUACa -5'
6517 5' -50.6 NC_001847.1 + 53191 0.66 0.987476
Target:  5'- --aGCGCGCCcGCGguguuaACGAAUAUGUu -3'
miRNA:   3'- aucUGCGCGGuUGUag----UGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 117815 0.66 0.987476
Target:  5'- cUAGAagGCGCCGGCuaCGCGGcCGUGUg -3'
miRNA:   3'- -AUCUg-CGCGGUUGuaGUGCUuGUACA- -5'
6517 5' -50.6 NC_001847.1 + 57777 0.66 0.987476
Target:  5'- cGGGCgccgGCGCCAcGCGUCGCacGGCGUGUc -3'
miRNA:   3'- aUCUG----CGCGGU-UGUAGUGc-UUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 115276 0.66 0.98578
Target:  5'- ----aGCGCCGcCAUgAUGAGCGUGUc -3'
miRNA:   3'- aucugCGCGGUuGUAgUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 134021 0.66 0.983914
Target:  5'- cGGGCGgucuCGCCAGCGUCGCagGGGCAc-- -3'
miRNA:   3'- aUCUGC----GCGGUUGUAGUG--CUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 91356 0.66 0.983914
Target:  5'- -cGGCGCGCCGGCGcgCGCGucCAg-- -3'
miRNA:   3'- auCUGCGCGGUUGUa-GUGCuuGUaca -5'
6517 5' -50.6 NC_001847.1 + 5763 0.66 0.983914
Target:  5'- -cGGCGCGCCAACGcgaagCGCG-GCGUc- -3'
miRNA:   3'- auCUGCGCGGUUGUa----GUGCuUGUAca -5'
6517 5' -50.6 NC_001847.1 + 117768 0.66 0.983718
Target:  5'- aUGGugGgCGCCGACAUCcacaaauaccccuGCGGGC-UGg -3'
miRNA:   3'- -AUCugC-GCGGUUGUAG-------------UGCUUGuACa -5'
6517 5' -50.6 NC_001847.1 + 75930 0.67 0.981868
Target:  5'- cGGugGCGCCGcCGUgcgccgccaCACGcGGCGUGUg -3'
miRNA:   3'- aUCugCGCGGUuGUA---------GUGC-UUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 50263 0.67 0.981868
Target:  5'- cUGGACGCGCUGGg--CGCGuACGUGg -3'
miRNA:   3'- -AUCUGCGCGGUUguaGUGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 49819 0.67 0.981868
Target:  5'- --cGCGCGCCAGCGggccaUCGgCGAGCAg-- -3'
miRNA:   3'- aucUGCGCGGUUGU-----AGU-GCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 93323 0.67 0.981868
Target:  5'- gUAGGCGCGCCAAUccCGCGccACGUc- -3'
miRNA:   3'- -AUCUGCGCGGUUGuaGUGCu-UGUAca -5'
6517 5' -50.6 NC_001847.1 + 41864 0.67 0.981868
Target:  5'- --cGCGcCGCCGACAUCGCGGcGCGa-- -3'
miRNA:   3'- aucUGC-GCGGUUGUAGUGCU-UGUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.