miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 3' -60.9 NC_001847.1 + 75011 0.67 0.610907
Target:  5'- cGGCGGGCGGGGG-GCCagcgggcagaaggCGcCGUCg -3'
miRNA:   3'- cUCGCUCGCUCCCgCGGa------------GCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 51368 0.67 0.60493
Target:  5'- gGGGCGcuuCGAGGGCuGCCUCGccggUGUCc -3'
miRNA:   3'- -CUCGCuc-GCUCCCG-CGGAGCa---GCAGa -5'
6518 3' -60.9 NC_001847.1 + 18080 0.67 0.60493
Target:  5'- aGGGCGgaGGCGAGGGCgaggcuuccGCCUCcUCGg-- -3'
miRNA:   3'- -CUCGC--UCGCUCCCG---------CGGAGcAGCaga -5'
6518 3' -60.9 NC_001847.1 + 19617 0.67 0.60493
Target:  5'- cGAGCucGGGCccGGGGCGCCggCGUCGgcgCg -3'
miRNA:   3'- -CUCG--CUCGc-UCCCGCGGa-GCAGCa--Ga -5'
6518 3' -60.9 NC_001847.1 + 12924 0.67 0.594984
Target:  5'- -cGCc-GCGGGGGCGCgCgUGUCGUCg -3'
miRNA:   3'- cuCGcuCGCUCCCGCG-GaGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 82660 0.67 0.585063
Target:  5'- -cGCGAGCGcGGcGCGCCgCGcUCGUgCUg -3'
miRNA:   3'- cuCGCUCGCuCC-CGCGGaGC-AGCA-GA- -5'
6518 3' -60.9 NC_001847.1 + 96681 0.67 0.579126
Target:  5'- -cGUGcGCGGGGGCcggcggguacgcgucGCCaaucUCGUCGUCUa -3'
miRNA:   3'- cuCGCuCGCUCCCG---------------CGG----AGCAGCAGA- -5'
6518 3' -60.9 NC_001847.1 + 58890 0.67 0.575175
Target:  5'- -cGUuGGCGAGGuGCGCCUCcauggCGUCg -3'
miRNA:   3'- cuCGcUCGCUCC-CGCGGAGca---GCAGa -5'
6518 3' -60.9 NC_001847.1 + 17808 0.68 0.565326
Target:  5'- cAGCGGGCggGAGGGCGCCaugccagugCGgcgcaCGUCg -3'
miRNA:   3'- cUCGCUCG--CUCCCGCGGa--------GCa----GCAGa -5'
6518 3' -60.9 NC_001847.1 + 133729 0.68 0.545766
Target:  5'- uGGCGGGCGcGGGGCcgcgugccuGCCUgUGUUGUCg -3'
miRNA:   3'- cUCGCUCGC-UCCCG---------CGGA-GCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 28643 0.68 0.545766
Target:  5'- -cGCGGGUGAGGcuaacgcuuuuGCGCgCUCGUCG-Ca -3'
miRNA:   3'- cuCGCUCGCUCC-----------CGCG-GAGCAGCaGa -5'
6518 3' -60.9 NC_001847.1 + 9518 0.68 0.545766
Target:  5'- cGAGcCGAGCGGGcGGCGCgCUag-CGUCc -3'
miRNA:   3'- -CUC-GCUCGCUC-CCGCG-GAgcaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 66335 0.68 0.545766
Target:  5'- cGGCGGGUGGggcgcGGGCGCCgccguggCGaUCGUCc -3'
miRNA:   3'- cUCGCUCGCU-----CCCGCGGa------GC-AGCAGa -5'
6518 3' -60.9 NC_001847.1 + 13121 0.68 0.545766
Target:  5'- gGGGCGcGCGGGcGGCGCCgCGcCGcCUg -3'
miRNA:   3'- -CUCGCuCGCUC-CCGCGGaGCaGCaGA- -5'
6518 3' -60.9 NC_001847.1 + 42065 0.68 0.545766
Target:  5'- cGGGCGcGCGcGGGgGCCUaCG-CGUCg -3'
miRNA:   3'- -CUCGCuCGCuCCCgCGGA-GCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 48829 0.68 0.536066
Target:  5'- cGGGCcuugccgcGCGGGGGCGCCUCGgccgCG-Cg -3'
miRNA:   3'- -CUCGcu------CGCUCCCGCGGAGCa---GCaGa -5'
6518 3' -60.9 NC_001847.1 + 61451 0.68 0.5351
Target:  5'- cGGGCGcGGCGAGGcggucgcgcagcaGCGCCgCGUCG-CUg -3'
miRNA:   3'- -CUCGC-UCGCUCC-------------CGCGGaGCAGCaGA- -5'
6518 3' -60.9 NC_001847.1 + 125292 0.68 0.526428
Target:  5'- aGGCGuGCGucgguccacaccAGGGCGCCUUGggCGUUUu -3'
miRNA:   3'- cUCGCuCGC------------UCCCGCGGAGCa-GCAGA- -5'
6518 3' -60.9 NC_001847.1 + 33147 0.68 0.526428
Target:  5'- gGAGUGGGuCGAGGGCGCuCUgGUgGg-- -3'
miRNA:   3'- -CUCGCUC-GCUCCCGCG-GAgCAgCaga -5'
6518 3' -60.9 NC_001847.1 + 2469 0.68 0.516855
Target:  5'- cGAGCGGGCGGcGGCGCCccCGcCGcCg -3'
miRNA:   3'- -CUCGCUCGCUcCCGCGGa-GCaGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.