miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 5' -54.2 NC_001847.1 + 11851 0.66 0.926634
Target:  5'- -uAGCgGAGGAuGGaCUUGAGUCG-CGCu -3'
miRNA:   3'- ucUCGgCUUCU-CC-GAGUUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 977 0.66 0.926634
Target:  5'- cGGGCCGgcGGGGCUUc---CGcCGCg -3'
miRNA:   3'- uCUCGGCuuCUCCGAGuucaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 23416 0.66 0.926634
Target:  5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3'
miRNA:   3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 126229 0.66 0.926634
Target:  5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3'
miRNA:   3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 134915 0.67 0.921081
Target:  5'- cGGGGCgCGAGGcccGGGCUCGGGccccCGggCGCc -3'
miRNA:   3'- -UCUCG-GCUUC---UCCGAGUUCa---GCa-GCG- -5'
6518 5' -54.2 NC_001847.1 + 96094 0.67 0.921081
Target:  5'- cGGAGCCGGAGucgGGGCcggagCcgGAGUCGggGCc -3'
miRNA:   3'- -UCUCGGCUUC---UCCGa----G--UUCAGCagCG- -5'
6518 5' -54.2 NC_001847.1 + 32102 0.67 0.921081
Target:  5'- cGGGGCgCGAGGcccGGGCUCGGGccccCGggCGCc -3'
miRNA:   3'- -UCUCG-GCUUC---UCCGAGUUCa---GCa-GCG- -5'
6518 5' -54.2 NC_001847.1 + 36698 0.67 0.920512
Target:  5'- gAGAGCggcguggUGGAGGcGGCUUcGGUCGcCGCc -3'
miRNA:   3'- -UCUCG-------GCUUCU-CCGAGuUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 68877 0.67 0.917631
Target:  5'- cGGGCCGAAGAGGCcuccccggcccagcaUgcCGAG-CGcCGCc -3'
miRNA:   3'- uCUCGGCUUCUCCG---------------A--GUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 96661 0.67 0.915281
Target:  5'- gGGGGCCGgcG-GGUaCGcGUCGUgCGCg -3'
miRNA:   3'- -UCUCGGCuuCuCCGaGUuCAGCA-GCG- -5'
6518 5' -54.2 NC_001847.1 + 21937 0.67 0.915281
Target:  5'- cGAGCCGGAGuccGaGCUC--GUCGUCcggGCg -3'
miRNA:   3'- uCUCGGCUUCu--C-CGAGuuCAGCAG---CG- -5'
6518 5' -54.2 NC_001847.1 + 2357 0.67 0.915281
Target:  5'- cGGGCCGcauGAGGUcC-AGUCG-CGCg -3'
miRNA:   3'- uCUCGGCuu-CUCCGaGuUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 130721 0.67 0.915281
Target:  5'- -aGGCCGAGGGGGCg-GAGgcgCGgaggaCGCg -3'
miRNA:   3'- ucUCGGCUUCUCCGagUUCa--GCa----GCG- -5'
6518 5' -54.2 NC_001847.1 + 96634 0.67 0.915281
Target:  5'- gGGGGCCGgcG-GGUaCGcGUCGUgCGCg -3'
miRNA:   3'- -UCUCGGCuuCuCCGaGUuCAGCA-GCG- -5'
6518 5' -54.2 NC_001847.1 + 96793 0.67 0.909235
Target:  5'- uGGGGCUGAAGcuGGgUCGGGgggCG-CGCa -3'
miRNA:   3'- -UCUCGGCUUCu-CCgAGUUCa--GCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 31704 0.67 0.909235
Target:  5'- gGGGGCgGggGgAGGCgCGGGcCG-CGCg -3'
miRNA:   3'- -UCUCGgCuuC-UCCGaGUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 134517 0.67 0.909235
Target:  5'- gGGGGCgGggGgAGGCgCGGGcCG-CGCg -3'
miRNA:   3'- -UCUCGgCuuC-UCCGaGUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 55370 0.67 0.909235
Target:  5'- cGGGcGCCGGAGAcGGUcggCGAGgacagCGUCGUc -3'
miRNA:   3'- -UCU-CGGCUUCU-CCGa--GUUCa----GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 82486 0.67 0.902945
Target:  5'- cGGGGCCGccGaAGGCgUAGGUCG-CGUc -3'
miRNA:   3'- -UCUCGGCuuC-UCCGaGUUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 91393 0.67 0.902945
Target:  5'- -cAGUCGAAGAGGCcCGcGUUGUUGg -3'
miRNA:   3'- ucUCGGCUUCUCCGaGUuCAGCAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.