miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6519 3' -54.5 NC_001847.1 + 80872 0.66 0.944023
Target:  5'- cGGauGAGCGCCU---CGAGCcGCUCg -3'
miRNA:   3'- -CCauCUCGCGGAaauGCUCGuCGGGg -5'
6519 3' -54.5 NC_001847.1 + 4974 0.66 0.944023
Target:  5'- cGGgGGGGCaGCUggggUGCG-GCGGCCgCg -3'
miRNA:   3'- -CCaUCUCG-CGGaa--AUGCuCGUCGGgG- -5'
6519 3' -54.5 NC_001847.1 + 20010 0.66 0.944023
Target:  5'- --gAGcAGCGCaCUUccaauaGGGCGGCCCUg -3'
miRNA:   3'- ccaUC-UCGCG-GAAaug---CUCGUCGGGG- -5'
6519 3' -54.5 NC_001847.1 + 116275 0.66 0.944023
Target:  5'- ----uGGCGCCgcucgGCGAgGCAgcguGCCCCg -3'
miRNA:   3'- ccaucUCGCGGaaa--UGCU-CGU----CGGGG- -5'
6519 3' -54.5 NC_001847.1 + 120335 0.66 0.944023
Target:  5'- --cAGGGCGCCgc-----GCAGCUCCg -3'
miRNA:   3'- ccaUCUCGCGGaaaugcuCGUCGGGG- -5'
6519 3' -54.5 NC_001847.1 + 60836 0.66 0.944023
Target:  5'- --aGGGGCGCCcgcgGCGcugcGCGGCgCCa -3'
miRNA:   3'- ccaUCUCGCGGaaa-UGCu---CGUCGgGG- -5'
6519 3' -54.5 NC_001847.1 + 107866 0.66 0.944023
Target:  5'- ------uCGCCcg-GCGGGCAGCCUCa -3'
miRNA:   3'- ccaucucGCGGaaaUGCUCGUCGGGG- -5'
6519 3' -54.5 NC_001847.1 + 96420 0.66 0.944023
Target:  5'- -aUGGcGGgGCCg--GCGGcaggcGCGGCCCCg -3'
miRNA:   3'- ccAUC-UCgCGGaaaUGCU-----CGUCGGGG- -5'
6519 3' -54.5 NC_001847.1 + 94230 0.66 0.944023
Target:  5'- cGGcGGGGCGCCcgcgcgGCGccguggAGCGGCUCg -3'
miRNA:   3'- -CCaUCUCGCGGaaa---UGC------UCGUCGGGg -5'
6519 3' -54.5 NC_001847.1 + 83919 0.66 0.944023
Target:  5'- --cGGcGCGCCc--GCGAGCAggGCCCg -3'
miRNA:   3'- ccaUCuCGCGGaaaUGCUCGU--CGGGg -5'
6519 3' -54.5 NC_001847.1 + 108943 0.66 0.944023
Target:  5'- gGGUGGAGUGCUUUUACugacacaaGGgGGCgCUg -3'
miRNA:   3'- -CCAUCUCGCGGAAAUGc-------UCgUCGgGG- -5'
6519 3' -54.5 NC_001847.1 + 82572 0.66 0.944023
Target:  5'- cGGUacacGGAGCGCgUgcGCGAagcgcucgcgGCGGCgCCu -3'
miRNA:   3'- -CCA----UCUCGCGgAaaUGCU----------CGUCGgGG- -5'
6519 3' -54.5 NC_001847.1 + 89059 0.66 0.944023
Target:  5'- cGGgccGGGCGCCUggcggACGuGUuuGCCCa -3'
miRNA:   3'- -CCau-CUCGCGGAaa---UGCuCGu-CGGGg -5'
6519 3' -54.5 NC_001847.1 + 22507 0.66 0.943566
Target:  5'- aGGcGGGGCGCUcugGCaGGGCAGCgggggugCCCu -3'
miRNA:   3'- -CCaUCUCGCGGaaaUG-CUCGUCG-------GGG- -5'
6519 3' -54.5 NC_001847.1 + 30896 0.66 0.941243
Target:  5'- cGGUGGccacGCGCCUggGCccGCGcaccgcggugcccguGCCCCg -3'
miRNA:   3'- -CCAUCu---CGCGGAaaUGcuCGU---------------CGGGG- -5'
6519 3' -54.5 NC_001847.1 + 117332 0.66 0.93982
Target:  5'- cGGcggGGGGCgGCCUcgccccccgcggcCGAGCAaaGCCCCg -3'
miRNA:   3'- -CCa--UCUCG-CGGAaau----------GCUCGU--CGGGG- -5'
6519 3' -54.5 NC_001847.1 + 31943 0.66 0.93934
Target:  5'- cGGUcGGAGCGCgguccgGCGcgcggcgcgcggGGCGGgCCCCg -3'
miRNA:   3'- -CCA-UCUCGCGgaaa--UGC------------UCGUC-GGGG- -5'
6519 3' -54.5 NC_001847.1 + 134756 0.66 0.93934
Target:  5'- cGGUcGGAGCGCgguccgGCGcgcggcgcgcggGGCGGgCCCCg -3'
miRNA:   3'- -CCA-UCUCGCGgaaa--UGC------------UCGUC-GGGG- -5'
6519 3' -54.5 NC_001847.1 + 109 0.66 0.93934
Target:  5'- gGGUccGGCGCCcc-GCGcccCGGCCCCg -3'
miRNA:   3'- -CCAucUCGCGGaaaUGCuc-GUCGGGG- -5'
6519 3' -54.5 NC_001847.1 + 51872 0.66 0.93934
Target:  5'- aGGU-GuGCGCCUcUGCGc-CcGCCCCg -3'
miRNA:   3'- -CCAuCuCGCGGAaAUGCucGuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.