miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6519 5' -52.9 NC_001847.1 + 122898 0.66 0.951004
Target:  5'- gGUGGGcaucGCAGCccucgccguucgGGUguGCGCGCGCCg- -3'
miRNA:   3'- -CACCU----CGUCG------------UCAauUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 3893 0.66 0.951004
Target:  5'- -cGGAGCGagccguugcgcGCGGUggcgcgGACGCACGCa-- -3'
miRNA:   3'- caCCUCGU-----------CGUCAa-----UUGCGUGUGgaa -5'
6519 5' -52.9 NC_001847.1 + 70531 0.66 0.951004
Target:  5'- cUGG-GCGGCGuGcUGGCGCugGCCg- -3'
miRNA:   3'- cACCuCGUCGU-CaAUUGCGugUGGaa -5'
6519 5' -52.9 NC_001847.1 + 55454 0.66 0.951004
Target:  5'- cUGGcGcCGGCGGg--GCGCGCGCCg- -3'
miRNA:   3'- cACCuC-GUCGUCaauUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 82299 0.66 0.951004
Target:  5'- cUGGAGCuGguGUUAACcgGCGC-CCg- -3'
miRNA:   3'- cACCUCGuCguCAAUUG--CGUGuGGaa -5'
6519 5' -52.9 NC_001847.1 + 91823 0.66 0.951004
Target:  5'- -cGGcgauGGCAGCAcGgcAGCGCGCGCUUc -3'
miRNA:   3'- caCC----UCGUCGU-CaaUUGCGUGUGGAa -5'
6519 5' -52.9 NC_001847.1 + 130827 0.66 0.951004
Target:  5'- -cGGAGCAcuacccGCAGgcGGCGCGCgaguACCa- -3'
miRNA:   3'- caCCUCGU------CGUCaaUUGCGUG----UGGaa -5'
6519 5' -52.9 NC_001847.1 + 53332 0.66 0.950569
Target:  5'- cUGGAccacgccGCAGCGGaaagcGACGCGCugCUg -3'
miRNA:   3'- cACCU-------CGUCGUCaa---UUGCGUGugGAa -5'
6519 5' -52.9 NC_001847.1 + 33304 0.66 0.946534
Target:  5'- ----cGCGGCAGgcgcaacGGCGCACACCg- -3'
miRNA:   3'- caccuCGUCGUCaa-----UUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 78051 0.66 0.946534
Target:  5'- -cGGcGCGGCGGUccagcgcAGCGCugGCCg- -3'
miRNA:   3'- caCCuCGUCGUCAa------UUGCGugUGGaa -5'
6519 5' -52.9 NC_001847.1 + 51677 0.66 0.946534
Target:  5'- -aGG-GCGGC-GUacGCGCGCGCCg- -3'
miRNA:   3'- caCCuCGUCGuCAauUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 96857 0.66 0.946534
Target:  5'- -gGGGGCGGCGGUgGGCgGCGguCCg- -3'
miRNA:   3'- caCCUCGUCGUCAaUUG-CGUguGGaa -5'
6519 5' -52.9 NC_001847.1 + 30116 0.66 0.943727
Target:  5'- -cGGGGCAGCAGaUgcuggcgauauacgcGACGCGCGgCg- -3'
miRNA:   3'- caCCUCGUCGUCaA---------------UUGCGUGUgGaa -5'
6519 5' -52.9 NC_001847.1 + 33821 0.66 0.941803
Target:  5'- cUGGAGCGGCuGU--GCGCAgACg-- -3'
miRNA:   3'- cACCUCGUCGuCAauUGCGUgUGgaa -5'
6519 5' -52.9 NC_001847.1 + 72058 0.66 0.941803
Target:  5'- ----cGCGGCGGUUGGCGCGCAg--- -3'
miRNA:   3'- caccuCGUCGUCAAUUGCGUGUggaa -5'
6519 5' -52.9 NC_001847.1 + 95580 0.66 0.941803
Target:  5'- -cGGGGCGGCcuucgcgGACGCGC-CCUUc -3'
miRNA:   3'- caCCUCGUCGucaa---UUGCGUGuGGAA- -5'
6519 5' -52.9 NC_001847.1 + 81908 0.66 0.941803
Target:  5'- -cGcGAGCuGCGGccu-CGCGCACCUg -3'
miRNA:   3'- caC-CUCGuCGUCaauuGCGUGUGGAa -5'
6519 5' -52.9 NC_001847.1 + 36959 0.66 0.941803
Target:  5'- -gGGGGCuGCGGccAGCGCggGCGCCg- -3'
miRNA:   3'- caCCUCGuCGUCaaUUGCG--UGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 99153 0.66 0.941803
Target:  5'- -cGGccgccuGCAGCGcGgcuGCGCGCGCCUUg -3'
miRNA:   3'- caCCu-----CGUCGU-CaauUGCGUGUGGAA- -5'
6519 5' -52.9 NC_001847.1 + 99610 0.66 0.936809
Target:  5'- -cGGGGCuGCAGUccggcggaaaaaUAcaagccccggcGCGCACGCCg- -3'
miRNA:   3'- caCCUCGuCGUCA------------AU-----------UGCGUGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.