miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6519 5' -52.9 NC_001847.1 + 97836 0.7 0.803575
Target:  5'- -cGGcGCGcGCGGgcuGCGCGCGCCUUa -3'
miRNA:   3'- caCCuCGU-CGUCaauUGCGUGUGGAA- -5'
6519 5' -52.9 NC_001847.1 + 105022 0.71 0.744484
Target:  5'- -cGGGGCGGCAGUaGGcCGCcaGCGCCg- -3'
miRNA:   3'- caCCUCGUCGUCAaUU-GCG--UGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 5622 0.7 0.764735
Target:  5'- cGUGGGcGCcGCGGUcccGCGCGCGCCa- -3'
miRNA:   3'- -CACCU-CGuCGUCAau-UGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 125379 0.7 0.774668
Target:  5'- -aGGAGgAGCGGUaAGCGgGCGCCc- -3'
miRNA:   3'- caCCUCgUCGUCAaUUGCgUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 49950 0.7 0.78446
Target:  5'- cGUGGcGC-GCGGUgc-CGCGCACCUa -3'
miRNA:   3'- -CACCuCGuCGUCAauuGCGUGUGGAa -5'
6519 5' -52.9 NC_001847.1 + 133565 0.7 0.78446
Target:  5'- --cGAGCGGCGcGcUGGCGCGCGCCg- -3'
miRNA:   3'- cacCUCGUCGU-CaAUUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 89825 0.7 0.794099
Target:  5'- cGUGGAGCGcGCGGccAACGCGCGaaaCUUu -3'
miRNA:   3'- -CACCUCGU-CGUCaaUUGCGUGUg--GAA- -5'
6519 5' -52.9 NC_001847.1 + 64185 0.7 0.803575
Target:  5'- -cGGGGCGGCGGgcgcGACGCugGCg-- -3'
miRNA:   3'- caCCUCGUCGUCaa--UUGCGugUGgaa -5'
6519 5' -52.9 NC_001847.1 + 42398 0.7 0.803575
Target:  5'- -cGGAGCcGCAuGUUcGCGCGCGCUg- -3'
miRNA:   3'- caCCUCGuCGU-CAAuUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 86326 0.71 0.723796
Target:  5'- aUGGGGCGcuuGCaccgGGUUGACGCGCugCUg -3'
miRNA:   3'- cACCUCGU---CG----UCAAUUGCGUGugGAa -5'
6519 5' -52.9 NC_001847.1 + 35021 0.71 0.723796
Target:  5'- cGUGGgccAGCugacGCGGUUGAUGCACAUCg- -3'
miRNA:   3'- -CACC---UCGu---CGUCAAUUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 102574 0.72 0.69213
Target:  5'- cUGGGGCAGCGGcgGGCG-GCGCCa- -3'
miRNA:   3'- cACCUCGUCGUCaaUUGCgUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 60301 0.76 0.470436
Target:  5'- -cGGGGCGGCGGgcggcagcGCGCGCGCCa- -3'
miRNA:   3'- caCCUCGUCGUCaau-----UGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 98816 0.74 0.552516
Target:  5'- -cGGGGCGGCAG--GACGCAC-CCUc -3'
miRNA:   3'- caCCUCGUCGUCaaUUGCGUGuGGAa -5'
6519 5' -52.9 NC_001847.1 + 25506 0.74 0.567371
Target:  5'- -cGGAGCgAgaccuccacgaaggcGCGGUUGGCGCGCACCg- -3'
miRNA:   3'- caCCUCG-U---------------CGUCAAUUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 37935 0.73 0.605975
Target:  5'- cUGGAGCAGCuGUcGGCGCugAUCg- -3'
miRNA:   3'- cACCUCGUCGuCAaUUGCGugUGGaa -5'
6519 5' -52.9 NC_001847.1 + 12670 0.73 0.605975
Target:  5'- gGUGGAGgAGCuGUUuACGUACGCCc- -3'
miRNA:   3'- -CACCUCgUCGuCAAuUGCGUGUGGaa -5'
6519 5' -52.9 NC_001847.1 + 83271 0.72 0.670723
Target:  5'- -gGGGGCGggcGCAGa-GGCGCACACCUg -3'
miRNA:   3'- caCCUCGU---CGUCaaUUGCGUGUGGAa -5'
6519 5' -52.9 NC_001847.1 + 26444 0.72 0.681449
Target:  5'- -cGGGGCAGCGGUaGGcCGCGCGgCUg -3'
miRNA:   3'- caCCUCGUCGUCAaUU-GCGUGUgGAa -5'
6519 5' -52.9 NC_001847.1 + 84729 0.72 0.69213
Target:  5'- -cGGuGguGCAGgcaGGCGCGCACCa- -3'
miRNA:   3'- caCCuCguCGUCaa-UUGCGUGUGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.