miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 3' -57.9 AC_000017.1 + 15212 0.67 0.393995
Target:  5'- gGCCGaGgcAGcggCCGA--AGCUGCCGCCc -3'
miRNA:   3'- -CGGC-CauUCa--GGUUcgUCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 16312 0.79 0.063777
Target:  5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAU----------UCAGgUUCG--UCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 16329 0.75 0.110218
Target:  5'- uGCCccccAGGUCCAggcgacgAGCGGCCGCCGCa -3'
miRNA:   3'- -CGGcca-UUCAGGU-------UCGUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 17289 0.76 0.101443
Target:  5'- uGCCGc--GGUgCAGGCGGCCGCUGCg -3'
miRNA:   3'- -CGGCcauUCAgGUUCGUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 17654 0.68 0.332356
Target:  5'- aGCCGGUcuuuguGGUUCuuGCAGauauggcccucacCUGCCGCCu -3'
miRNA:   3'- -CGGCCAu-----UCAGGuuCGUC-------------GGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 17865 0.68 0.325067
Target:  5'- cGCCGcGcaugcgacGGUgCGAcGCGcGCCGCCGCCg -3'
miRNA:   3'- -CGGC-Cau------UCAgGUU-CGU-CGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 22082 0.68 0.357512
Target:  5'- cGCUGGaaAAGUCCAcccaaagcgugcAGgGGCCcaacucgGCCGCCu -3'
miRNA:   3'- -CGGCCa-UUCAGGU------------UCgUCGG-------CGGCGG- -5'
652 3' -57.9 AC_000017.1 + 26191 0.68 0.367064
Target:  5'- cGCCGGacuggGGGUCCAAGUAaacCCcCCGUCc -3'
miRNA:   3'- -CGGCCa----UUCAGGUUCGUc--GGcGGCGG- -5'
652 3' -57.9 AC_000017.1 + 26537 1.14 0.000141
Target:  5'- gGCCGGUAAGUCCAAGCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAUUCAGGUUCGUCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 31333 0.8 0.050412
Target:  5'- uGCCGGccuuGUCCAGGgcuaGGCCGCUGCCc -3'
miRNA:   3'- -CGGCCauu-CAGGUUCg---UCGGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.