Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
652 | 3' | -57.9 | AC_000017.1 | + | 26537 | 1.14 | 0.000141 |
Target: 5'- gGCCGGUAAGUCCAAGCAGCCGCCGCCg -3' miRNA: 3'- -CGGCCAUUCAGGUUCGUCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 31333 | 0.8 | 0.050412 |
Target: 5'- uGCCGGccuuGUCCAGGgcuaGGCCGCUGCCc -3' miRNA: 3'- -CGGCCauu-CAGGUUCg---UCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 16312 | 0.79 | 0.063777 |
Target: 5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3' miRNA: 3'- -CGGCCAU----------UCAGgUUCG--UCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 17289 | 0.76 | 0.101443 |
Target: 5'- uGCCGc--GGUgCAGGCGGCCGCUGCg -3' miRNA: 3'- -CGGCcauUCAgGUUCGUCGGCGGCGg -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 16329 | 0.75 | 0.110218 |
Target: 5'- uGCCccccAGGUCCAggcgacgAGCGGCCGCCGCa -3' miRNA: 3'- -CGGcca-UUCAGGU-------UCGUCGGCGGCGg -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 11471 | 0.75 | 0.117345 |
Target: 5'- aCCGGgauuAGUCCcgcgcgcgcacacguGGCGGCCGCCGaCCu -3' miRNA: 3'- cGGCCau--UCAGGu--------------UCGUCGGCGGC-GG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 12510 | 0.74 | 0.127397 |
Target: 5'- aGCCGGUuGG-CCu-GUGGCUGCUGCCg -3' miRNA: 3'- -CGGCCAuUCaGGuuCGUCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 2275 | 0.74 | 0.138628 |
Target: 5'- gGCCGGcucucGGGuUCCAugGGCucugcuccuGCCGCCGCCg -3' miRNA: 3'- -CGGCCa----UUC-AGGU--UCGu--------CGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 10671 | 0.73 | 0.163853 |
Target: 5'- aCCGG--GGUUCGAGCcccguauccGGCCGuCCGCCg -3' miRNA: 3'- cGGCCauUCAGGUUCG---------UCGGC-GGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 10870 | 0.72 | 0.202222 |
Target: 5'- cGCgCGGccAGUggCCAaaaaaagcuagcgcAGCAGCCGCCGCg -3' miRNA: 3'- -CG-GCCauUCA--GGU--------------UCGUCGGCGGCGg -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 3569 | 0.7 | 0.271748 |
Target: 5'- --aGGUGggGGUCUcauguaguuuuguAucuguuuugcAGCAGCCGCCGCCa -3' miRNA: 3'- cggCCAU--UCAGG-------------U----------UCGUCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 11558 | 0.7 | 0.272448 |
Target: 5'- -gCGGUua--CCAGGuCGGCgGCCGCCa -3' miRNA: 3'- cgGCCAuucaGGUUC-GUCGgCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 12699 | 0.7 | 0.272448 |
Target: 5'- aGCCGGUccAGGUUgGucuGCAcGuuGCCGCUg -3' miRNA: 3'- -CGGCCA--UUCAGgUu--CGU-CggCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 10418 | 0.69 | 0.279525 |
Target: 5'- cGCUGGccccUCUAccgcCAGCCGCCGCCg -3' miRNA: 3'- -CGGCCauucAGGUuc--GUCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 15157 | 0.69 | 0.317108 |
Target: 5'- uGCCGcGUugGAGUUCucuuccGC-GCCGCUGCCa -3' miRNA: 3'- -CGGC-CA--UUCAGGuu----CGuCGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 846 | 0.69 | 0.317108 |
Target: 5'- cCCGGc-AGcCCGAGCAGCCGgaGCa -3' miRNA: 3'- cGGCCauUCaGGUUCGUCGGCggCGg -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 6487 | 0.69 | 0.317108 |
Target: 5'- cGCUcGUuGGUCCAgcagaGGCGGCCGCCcuuGCg -3' miRNA: 3'- -CGGcCAuUCAGGU-----UCGUCGGCGG---CGg -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 17865 | 0.68 | 0.325067 |
Target: 5'- cGCCGcGcaugcgacGGUgCGAcGCGcGCCGCCGCCg -3' miRNA: 3'- -CGGC-Cau------UCAgGUU-CGU-CGGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 17654 | 0.68 | 0.332356 |
Target: 5'- aGCCGGUcuuuguGGUUCuuGCAGauauggcccucacCUGCCGCCu -3' miRNA: 3'- -CGGCCAu-----UCAGGuuCGUC-------------GGCGGCGG- -5' |
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652 | 3' | -57.9 | AC_000017.1 | + | 14304 | 0.68 | 0.335634 |
Target: 5'- -aCGGcGGGUCCAGGggagcauCGaagggggaacccagcGCCGCCGCCa -3' miRNA: 3'- cgGCCaUUCAGGUUC-------GU---------------CGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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