miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 3' -57.9 AC_000017.1 + 10870 0.72 0.202222
Target:  5'- cGCgCGGccAGUggCCAaaaaaagcuagcgcAGCAGCCGCCGCg -3'
miRNA:   3'- -CG-GCCauUCA--GGU--------------UCGUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 10671 0.73 0.163853
Target:  5'- aCCGG--GGUUCGAGCcccguauccGGCCGuCCGCCg -3'
miRNA:   3'- cGGCCauUCAGGUUCG---------UCGGC-GGCGG- -5'
652 3' -57.9 AC_000017.1 + 2275 0.74 0.138628
Target:  5'- gGCCGGcucucGGGuUCCAugGGCucugcuccuGCCGCCGCCg -3'
miRNA:   3'- -CGGCCa----UUC-AGGU--UCGu--------CGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 12510 0.74 0.127397
Target:  5'- aGCCGGUuGG-CCu-GUGGCUGCUGCCg -3'
miRNA:   3'- -CGGCCAuUCaGGuuCGUCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 11471 0.75 0.117345
Target:  5'- aCCGGgauuAGUCCcgcgcgcgcacacguGGCGGCCGCCGaCCu -3'
miRNA:   3'- cGGCCau--UCAGGu--------------UCGUCGGCGGC-GG- -5'
652 3' -57.9 AC_000017.1 + 16329 0.75 0.110218
Target:  5'- uGCCccccAGGUCCAggcgacgAGCGGCCGCCGCa -3'
miRNA:   3'- -CGGcca-UUCAGGU-------UCGUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 17289 0.76 0.101443
Target:  5'- uGCCGc--GGUgCAGGCGGCCGCUGCg -3'
miRNA:   3'- -CGGCcauUCAgGUUCGUCGGCGGCGg -5'
652 3' -57.9 AC_000017.1 + 16312 0.79 0.063777
Target:  5'- gGCCGGUGcgacgugcgcGGUU-AAGCagGGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAU----------UCAGgUUCG--UCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 31333 0.8 0.050412
Target:  5'- uGCCGGccuuGUCCAGGgcuaGGCCGCUGCCc -3'
miRNA:   3'- -CGGCCauu-CAGGUUCg---UCGGCGGCGG- -5'
652 3' -57.9 AC_000017.1 + 26537 1.14 0.000141
Target:  5'- gGCCGGUAAGUCCAAGCAGCCGCCGCCg -3'
miRNA:   3'- -CGGCCAUUCAGGUUCGUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.