miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 11812 0.69 0.510508
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 17676 0.66 0.729444
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
652 5' -52.6 AC_000017.1 + 33344 0.66 0.690652
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 19248 0.69 0.510508
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaagugggGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5'
652 5' -52.6 AC_000017.1 + 3857 0.71 0.425299
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 17032 0.71 0.425299
Target:  5'- cGGGCAGCAccugcuGCAGUGUCAcGGGCUuuagGCUa -3'
miRNA:   3'- uCUCGUUGU------UGUCGCGGU-UCCGA----UGG- -5'
652 5' -52.6 AC_000017.1 + 9435 0.72 0.385986
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
652 5' -52.6 AC_000017.1 + 11094 0.74 0.268365
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 6116 0.67 0.67211
Target:  5'- cGGGCAugAcuuCuGCGCUAAGGUUGUCa -3'
miRNA:   3'- uCUCGUugUu--GuCGCGGUUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 9487 0.67 0.66862
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 6707 0.69 0.555721
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
652 5' -52.6 AC_000017.1 + 25387 0.69 0.544293
Target:  5'- uGGGCGugugGCAGCAGUGCCuggagGAGcGCaACCu -3'
miRNA:   3'- uCUCGU----UGUUGUCGCGG-----UUC-CGaUGG- -5'
652 5' -52.6 AC_000017.1 + 9307 0.69 0.529554
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 8474 0.69 0.521678
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5'
652 5' -52.6 AC_000017.1 + 2154 0.73 0.331692
Target:  5'- aGGAGCAGCAGCAGCaacagcagcaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG----------CGg-UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 9751 0.67 0.637092
Target:  5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5'
652 5' -52.6 AC_000017.1 + 10349 0.67 0.647617
Target:  5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3'
miRNA:   3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 17393 0.67 0.648786
Target:  5'- cGAGgAAguACGGCGCCGccAGcgcGCUACUg -3'
miRNA:   3'- uCUCgUUguUGUCGCGGU--UC---CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 8680 0.67 0.648786
Target:  5'- aGGAGCuGguGCuGCGCacgGAGGUUGCUg -3'
miRNA:   3'- -UCUCGuUguUGuCGCGg--UUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 27990 0.67 0.659297
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.