miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 33229 0.67 0.660463
Target:  5'- uGAGCAACcgcaaguugGACAGCaGCCuguGGCUcaGCa -3'
miRNA:   3'- uCUCGUUG---------UUGUCG-CGGuu-CCGA--UGg -5'
652 5' -52.6 AC_000017.1 + 27990 0.67 0.659297
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5'
652 5' -52.6 AC_000017.1 + 8680 0.67 0.648786
Target:  5'- aGGAGCuGguGCuGCGCacgGAGGUUGCUg -3'
miRNA:   3'- -UCUCGuUguUGuCGCGg--UUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 11730 0.67 0.648786
Target:  5'- aAGA--AACAACuGCGCCAugagcGGCUugCu -3'
miRNA:   3'- -UCUcgUUGUUGuCGCGGUu----CCGAugG- -5'
652 5' -52.6 AC_000017.1 + 17393 0.67 0.648786
Target:  5'- cGAGgAAguACGGCGCCGccAGcgcGCUACUg -3'
miRNA:   3'- uCUCgUUguUGUCGCGGU--UC---CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 10349 0.67 0.647617
Target:  5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3'
miRNA:   3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 9751 0.67 0.637092
Target:  5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5'
652 5' -52.6 AC_000017.1 + 15521 0.67 0.635922
Target:  5'- cGGGCAACGAcCAGUauaccugcuccgaGCCGcAGGUUACg -3'
miRNA:   3'- uCUCGUUGUU-GUCG-------------CGGU-UCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 6444 0.67 0.625392
Target:  5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3'
miRNA:   3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 15077 0.67 0.625392
Target:  5'- -cGGCAACAACAGUGgCAGcGGCg--- -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUU-CCGaugg -5'
652 5' -52.6 AC_000017.1 + 14085 0.68 0.613699
Target:  5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3'
miRNA:   3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 17584 0.68 0.602025
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 16867 0.68 0.602025
Target:  5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3'
miRNA:   3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5'
652 5' -52.6 AC_000017.1 + 1063 0.68 0.602025
Target:  5'- aAGAcCuGCAACcGUGCCcGGGCUGCUc -3'
miRNA:   3'- -UCUcGuUGUUGuCGCGGuUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 17330 0.68 0.602025
Target:  5'- --cGCGGCAucugcCAcCGCCGAGGCgACCg -3'
miRNA:   3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 3982 0.68 0.602025
Target:  5'- uGGAGCugcGCAGCAGguuucUGCCcugAAGGCUuCCu -3'
miRNA:   3'- -UCUCGu--UGUUGUC-----GCGG---UUCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 20884 0.68 0.590379
Target:  5'- --cGCAACuggGCGGCuuuCCGAGGCUggGCCu -3'
miRNA:   3'- ucuCGUUGu--UGUCGc--GGUUCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 15196 0.68 0.577615
Target:  5'- aGGAGaAGCGcgcugaggccgagGCAGCgGCCGAaGCUGCCg -3'
miRNA:   3'- -UCUCgUUGU-------------UGUCG-CGGUUcCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 6707 0.69 0.555721
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
652 5' -52.6 AC_000017.1 + 21734 0.69 0.555721
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.